Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS14660 and A4249_RS14665 are separated by 49 nucleotides A4249_RS14665 and A4249_RS14670 are separated by 83 nucleotides A4249_RS14670 and A4249_RS14675 are separated by 7 nucleotides A4249_RS14675 and A4249_RS14680 are separated by 130 nucleotides
A4249_RS14660: A4249_RS14660 - hypothetical protein, at 2,969,257 to 2,970,393
_RS14660
A4249_RS14665: A4249_RS14665 - orotidine-5'-phosphate decarboxylase, at 2,970,443 to 2,971,171
_RS14665
A4249_RS14670: A4249_RS14670 - MarC family protein, at 2,971,255 to 2,971,950
_RS14670
A4249_RS14675: A4249_RS14675 - metallopeptidase family protein, at 2,971,958 to 2,972,356
_RS14675
A4249_RS14680: A4249_RS14680 - PAS domain-containing sensor histidine kinase, at 2,972,487 to 2,974,808
_RS14680
Position (kb)
2971
2972 Strain fitness (log2 ratio)
-2
-1
0
1 at 2970.304 kb on + strand at 2970.305 kb on - strand at 2970.305 kb on - strand at 2970.307 kb on + strand at 2970.307 kb on + strand at 2970.307 kb on + strand at 2970.307 kb on + strand at 2971.926 kb on + strand at 2971.927 kb on - strand at 2971.949 kb on - strand at 2972.103 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.172 kb on + strand, within A4249_RS14675 at 2972.173 kb on - strand, within A4249_RS14675 at 2972.173 kb on - strand, within A4249_RS14675 at 2972.173 kb on - strand, within A4249_RS14675 at 2972.173 kb on - strand, within A4249_RS14675 at 2972.173 kb on - strand, within A4249_RS14675 at 2972.183 kb on + strand, within A4249_RS14675 at 2972.344 kb on + strand at 2972.345 kb on - strand at 2972.443 kb on + strand at 2972.443 kb on + strand at 2972.443 kb on + strand at 2972.444 kb on - strand at 2972.444 kb on - strand at 2972.444 kb on - strand at 2972.444 kb on - strand at 2972.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 2,970,304 + -0.4 2,970,305 - -1.5 2,970,305 - +0.1 2,970,307 + +0.4 2,970,307 + -1.1 2,970,307 + -0.4 2,970,307 + +1.2 2,971,926 + +0.3 2,971,927 - +0.3 2,971,949 - -0.6 2,972,103 + A4249_RS14675 0.36 +0.6 2,972,172 + A4249_RS14675 0.54 +0.5 2,972,172 + A4249_RS14675 0.54 +0.4 2,972,172 + A4249_RS14675 0.54 -0.0 2,972,172 + A4249_RS14675 0.54 -1.3 2,972,172 + A4249_RS14675 0.54 -0.5 2,972,172 + A4249_RS14675 0.54 +0.3 2,972,172 + A4249_RS14675 0.54 -0.2 2,972,173 - A4249_RS14675 0.54 +0.0 2,972,173 - A4249_RS14675 0.54 +0.1 2,972,173 - A4249_RS14675 0.54 +0.3 2,972,173 - A4249_RS14675 0.54 -0.2 2,972,173 - A4249_RS14675 0.54 +0.3 2,972,183 + A4249_RS14675 0.56 -1.1 2,972,344 + -2.5 2,972,345 - -0.5 2,972,443 + +0.9 2,972,443 + +0.4 2,972,443 + -1.3 2,972,444 - -0.8 2,972,444 - -0.2 2,972,444 - -0.6 2,972,444 - -0.3 2,972,444 - +0.0
Or see this region's nucleotide sequence