Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14265

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14260 and A4249_RS14265 overlap by 4 nucleotidesA4249_RS14265 and A4249_RS14270 are separated by 95 nucleotides A4249_RS14260: A4249_RS14260 - membrane protein insertase YidC, at 2,870,841 to 2,872,637 _RS14260 A4249_RS14265: A4249_RS14265 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 2,872,634 to 2,873,287 _RS14265 A4249_RS14270: A4249_RS14270 - pitrilysin family protein, at 2,873,383 to 2,876,247 _RS14270 Position (kb) 2872 2873 2874Strain fitness (log2 ratio) -2 -1 0 1 2at 2872.579 kb on - strandat 2873.286 kb on - strandat 2873.384 kb on + strandat 2873.384 kb on + strandat 2873.384 kb on + strandat 2873.385 kb on - strandat 2873.385 kb on - strandat 2873.570 kb on + strandat 2873.636 kb on + strandat 2873.637 kb on - strandat 2873.637 kb on - strandat 2873.792 kb on + strand, within A4249_RS14270at 2873.792 kb on + strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.793 kb on - strand, within A4249_RS14270at 2873.837 kb on + strand, within A4249_RS14270at 2873.837 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.972 kb on + strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2873.973 kb on - strand, within A4249_RS14270at 2874.176 kb on + strand, within A4249_RS14270at 2874.177 kb on - strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.269 kb on + strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270at 2874.270 kb on - strand, within A4249_RS14270

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,872,579 - +1.5
2,873,286 - -1.1
2,873,384 + +0.4
2,873,384 + +0.8
2,873,384 + -1.4
2,873,385 - -0.4
2,873,385 - +0.1
2,873,570 + -0.6
2,873,636 + -0.5
2,873,637 - +0.9
2,873,637 - +0.7
2,873,792 + A4249_RS14270 0.14 +0.3
2,873,792 + A4249_RS14270 0.14 +1.2
2,873,793 - A4249_RS14270 0.14 -1.4
2,873,793 - A4249_RS14270 0.14 +0.3
2,873,793 - A4249_RS14270 0.14 -0.2
2,873,793 - A4249_RS14270 0.14 +0.9
2,873,793 - A4249_RS14270 0.14 -0.9
2,873,793 - A4249_RS14270 0.14 -0.6
2,873,837 + A4249_RS14270 0.16 +0.7
2,873,837 + A4249_RS14270 0.16 -1.4
2,873,972 + A4249_RS14270 0.21 +1.9
2,873,972 + A4249_RS14270 0.21 -0.3
2,873,972 + A4249_RS14270 0.21 +0.3
2,873,972 + A4249_RS14270 0.21 -0.3
2,873,972 + A4249_RS14270 0.21 -1.2
2,873,972 + A4249_RS14270 0.21 -0.6
2,873,972 + A4249_RS14270 0.21 +0.0
2,873,973 - A4249_RS14270 0.21 -1.2
2,873,973 - A4249_RS14270 0.21 -0.9
2,873,973 - A4249_RS14270 0.21 +0.6
2,873,973 - A4249_RS14270 0.21 -0.6
2,873,973 - A4249_RS14270 0.21 -0.4
2,873,973 - A4249_RS14270 0.21 -0.6
2,873,973 - A4249_RS14270 0.21 -0.1
2,873,973 - A4249_RS14270 0.21 +0.1
2,873,973 - A4249_RS14270 0.21 +0.1
2,874,176 + A4249_RS14270 0.28 -1.8
2,874,177 - A4249_RS14270 0.28 +0.2
2,874,269 + A4249_RS14270 0.31 +0.3
2,874,269 + A4249_RS14270 0.31 +0.4
2,874,269 + A4249_RS14270 0.31 -1.1
2,874,269 + A4249_RS14270 0.31 +1.5
2,874,269 + A4249_RS14270 0.31 +0.6
2,874,269 + A4249_RS14270 0.31 -1.3
2,874,269 + A4249_RS14270 0.31 +0.7
2,874,269 + A4249_RS14270 0.31 -0.4
2,874,269 + A4249_RS14270 0.31 -0.2
2,874,270 - A4249_RS14270 0.31 +0.2
2,874,270 - A4249_RS14270 0.31 +0.1
2,874,270 - A4249_RS14270 0.31 +0.3
2,874,270 - A4249_RS14270 0.31 -0.0
2,874,270 - A4249_RS14270 0.31 -0.7
2,874,270 - A4249_RS14270 0.31 -0.7
2,874,270 - A4249_RS14270 0.31 +0.5
2,874,270 - A4249_RS14270 0.31 -0.4
2,874,270 - A4249_RS14270 0.31 +0.3
2,874,270 - A4249_RS14270 0.31 +0.2
2,874,270 - A4249_RS14270 0.31 -0.7
2,874,270 - A4249_RS14270 0.31 +0.7
2,874,270 - A4249_RS14270 0.31 +0.6
2,874,270 - A4249_RS14270 0.31 -1.1

Or see this region's nucleotide sequence