Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14000

Experiment: Cytidine 0.41115 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13995 and A4249_RS14000 are separated by 18 nucleotidesA4249_RS14000 and A4249_RS14005 are separated by 108 nucleotides A4249_RS13995: A4249_RS13995 - transcription termination factor NusA, at 2,821,374 to 2,823,107 _RS13995 A4249_RS14000: A4249_RS14000 - RNA-binding protein, at 2,823,126 to 2,823,785 _RS14000 A4249_RS14005: A4249_RS14005 - translation initiation factor IF-2, at 2,823,894 to 2,826,920 _RS14005 Position (kb) 2823 2824Strain fitness (log2 ratio) -3 -2 -1 0 1at 2822.985 kb on + strandat 2823.018 kb on + strandat 2823.018 kb on + strandat 2823.019 kb on - strandat 2823.019 kb on - strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.125 kb on + strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.126 kb on - strandat 2823.847 kb on + strandat 2823.847 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strandat 2823.850 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
remove
2,822,985 + -0.1
2,823,018 + -0.3
2,823,018 + +0.2
2,823,019 - -1.5
2,823,019 - -1.8
2,823,125 + +0.4
2,823,125 + +0.3
2,823,125 + +0.7
2,823,125 + +0.1
2,823,125 + -0.8
2,823,125 + +0.0
2,823,125 + +0.8
2,823,125 + +0.2
2,823,125 + -3.2
2,823,125 + -0.3
2,823,125 + -1.4
2,823,126 - +0.0
2,823,126 - -0.6
2,823,126 - -1.0
2,823,126 - -0.8
2,823,126 - +0.4
2,823,126 - +0.1
2,823,126 - -0.1
2,823,126 - -0.5
2,823,126 - -0.3
2,823,126 - -0.8
2,823,126 - +0.0
2,823,126 - +0.1
2,823,126 - -1.2
2,823,126 - -1.0
2,823,126 - -1.5
2,823,126 - -0.3
2,823,126 - +0.3
2,823,847 + +0.3
2,823,847 + +0.8
2,823,850 + -0.7
2,823,850 + -1.1
2,823,850 + -1.5
2,823,850 + +0.7
2,823,850 + -0.2
2,823,850 + +0.5

Or see this region's nucleotide sequence