Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13115

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13110 and A4249_RS13115 are separated by 446 nucleotidesA4249_RS13115 and A4249_RS13120 overlap by 4 nucleotidesA4249_RS13120 and A4249_RS13125 are separated by 64 nucleotides A4249_RS13110: A4249_RS13110 - DUF3363 domain-containing protein, at 2,637,392 to 2,639,095 _RS13110 A4249_RS13115: A4249_RS13115 - phosphoglucosamine mutase, at 2,639,542 to 2,639,787 _RS13115 A4249_RS13120: A4249_RS13120 - hypothetical protein, at 2,639,784 to 2,640,245 _RS13120 A4249_RS13125: A4249_RS13125 - ribonuclease PH, at 2,640,310 to 2,641,035 _RS13125 Position (kb) 2639 2640Strain fitness (log2 ratio) -1 0 1at 2638.741 kb on + strand, within A4249_RS13110at 2638.741 kb on + strand, within A4249_RS13110at 2638.741 kb on + strand, within A4249_RS13110at 2638.741 kb on + strand, within A4249_RS13110at 2638.741 kb on + strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.742 kb on - strand, within A4249_RS13110at 2638.772 kb on + strand, within A4249_RS13110at 2638.773 kb on - strand, within A4249_RS13110at 2638.773 kb on - strand, within A4249_RS13110at 2639.049 kb on + strandat 2639.049 kb on + strandat 2639.049 kb on + strandat 2639.256 kb on + strandat 2639.257 kb on - strandat 2639.390 kb on + strandat 2639.390 kb on + strandat 2639.390 kb on + strandat 2639.391 kb on - strandat 2639.393 kb on + strandat 2639.393 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.516 kb on + strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.517 kb on - strandat 2639.775 kb on - strandat 2639.785 kb on + strandat 2640.311 kb on + strandat 2640.507 kb on - strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.608 kb on + strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125at 2640.609 kb on - strand, within A4249_RS13125

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,638,741 + A4249_RS13110 0.79 -0.2
2,638,741 + A4249_RS13110 0.79 -0.8
2,638,741 + A4249_RS13110 0.79 -1.1
2,638,741 + A4249_RS13110 0.79 -0.9
2,638,741 + A4249_RS13110 0.79 -0.7
2,638,742 - A4249_RS13110 0.79 -1.0
2,638,742 - A4249_RS13110 0.79 -1.3
2,638,742 - A4249_RS13110 0.79 -0.3
2,638,742 - A4249_RS13110 0.79 -0.3
2,638,742 - A4249_RS13110 0.79 -0.5
2,638,742 - A4249_RS13110 0.79 -1.5
2,638,742 - A4249_RS13110 0.79 -0.4
2,638,772 + A4249_RS13110 0.81 -0.3
2,638,773 - A4249_RS13110 0.81 -0.4
2,638,773 - A4249_RS13110 0.81 -1.2
2,639,049 + -1.4
2,639,049 + -0.5
2,639,049 + +1.4
2,639,256 + +0.2
2,639,257 - +0.5
2,639,390 + +0.8
2,639,390 + -1.6
2,639,390 + -0.7
2,639,391 - -0.1
2,639,393 + -0.1
2,639,393 + +0.1
2,639,516 + -0.4
2,639,516 + -0.4
2,639,516 + +0.2
2,639,516 + -0.2
2,639,516 + -0.9
2,639,516 + +0.3
2,639,516 + -0.4
2,639,516 + +1.1
2,639,516 + -1.1
2,639,517 - -0.6
2,639,517 - +0.7
2,639,517 - -0.8
2,639,517 - -0.9
2,639,517 - +0.5
2,639,517 - -0.2
2,639,517 - -0.3
2,639,517 - -0.5
2,639,517 - -0.2
2,639,517 - +1.5
2,639,517 - -0.8
2,639,775 - -0.3
2,639,785 + -1.1
2,640,311 + -0.2
2,640,507 - A4249_RS13125 0.27 +1.0
2,640,608 + A4249_RS13125 0.41 -1.1
2,640,608 + A4249_RS13125 0.41 -0.8
2,640,608 + A4249_RS13125 0.41 +0.2
2,640,609 - A4249_RS13125 0.41 -0.8
2,640,609 - A4249_RS13125 0.41 -0.8
2,640,609 - A4249_RS13125 0.41 -0.7

Or see this region's nucleotide sequence