Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS13110 and A4249_RS13115 are separated by 446 nucleotides A4249_RS13115 and A4249_RS13120 overlap by 4 nucleotides A4249_RS13120 and A4249_RS13125 are separated by 64 nucleotides
A4249_RS13110: A4249_RS13110 - DUF3363 domain-containing protein, at 2,637,392 to 2,639,095
_RS13110
A4249_RS13115: A4249_RS13115 - phosphoglucosamine mutase, at 2,639,542 to 2,639,787
_RS13115
A4249_RS13120: A4249_RS13120 - hypothetical protein, at 2,639,784 to 2,640,245
_RS13120
A4249_RS13125: A4249_RS13125 - ribonuclease PH, at 2,640,310 to 2,641,035
_RS13125
Position (kb)
2639
2640 Strain fitness (log2 ratio)
-1
0
1 at 2638.741 kb on + strand, within A4249_RS13110 at 2638.741 kb on + strand, within A4249_RS13110 at 2638.741 kb on + strand, within A4249_RS13110 at 2638.741 kb on + strand, within A4249_RS13110 at 2638.741 kb on + strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.742 kb on - strand, within A4249_RS13110 at 2638.772 kb on + strand, within A4249_RS13110 at 2638.773 kb on - strand, within A4249_RS13110 at 2638.773 kb on - strand, within A4249_RS13110 at 2639.049 kb on + strand at 2639.049 kb on + strand at 2639.049 kb on + strand at 2639.256 kb on + strand at 2639.257 kb on - strand at 2639.390 kb on + strand at 2639.390 kb on + strand at 2639.390 kb on + strand at 2639.391 kb on - strand at 2639.393 kb on + strand at 2639.393 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.516 kb on + strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.517 kb on - strand at 2639.775 kb on - strand at 2639.785 kb on + strand at 2640.311 kb on + strand at 2640.507 kb on - strand, within A4249_RS13125 at 2640.608 kb on + strand, within A4249_RS13125 at 2640.608 kb on + strand, within A4249_RS13125 at 2640.608 kb on + strand, within A4249_RS13125 at 2640.609 kb on - strand, within A4249_RS13125 at 2640.609 kb on - strand, within A4249_RS13125 at 2640.609 kb on - strand, within A4249_RS13125
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 2,638,741 + A4249_RS13110 0.79 -0.2 2,638,741 + A4249_RS13110 0.79 -0.8 2,638,741 + A4249_RS13110 0.79 -1.1 2,638,741 + A4249_RS13110 0.79 -0.9 2,638,741 + A4249_RS13110 0.79 -0.7 2,638,742 - A4249_RS13110 0.79 -1.0 2,638,742 - A4249_RS13110 0.79 -1.3 2,638,742 - A4249_RS13110 0.79 -0.3 2,638,742 - A4249_RS13110 0.79 -0.3 2,638,742 - A4249_RS13110 0.79 -0.5 2,638,742 - A4249_RS13110 0.79 -1.5 2,638,742 - A4249_RS13110 0.79 -0.4 2,638,772 + A4249_RS13110 0.81 -0.3 2,638,773 - A4249_RS13110 0.81 -0.4 2,638,773 - A4249_RS13110 0.81 -1.2 2,639,049 + -1.4 2,639,049 + -0.5 2,639,049 + +1.4 2,639,256 + +0.2 2,639,257 - +0.5 2,639,390 + +0.8 2,639,390 + -1.6 2,639,390 + -0.7 2,639,391 - -0.1 2,639,393 + -0.1 2,639,393 + +0.1 2,639,516 + -0.4 2,639,516 + -0.4 2,639,516 + +0.2 2,639,516 + -0.2 2,639,516 + -0.9 2,639,516 + +0.3 2,639,516 + -0.4 2,639,516 + +1.1 2,639,516 + -1.1 2,639,517 - -0.6 2,639,517 - +0.7 2,639,517 - -0.8 2,639,517 - -0.9 2,639,517 - +0.5 2,639,517 - -0.2 2,639,517 - -0.3 2,639,517 - -0.5 2,639,517 - -0.2 2,639,517 - +1.5 2,639,517 - -0.8 2,639,775 - -0.3 2,639,785 + -1.1 2,640,311 + -0.2 2,640,507 - A4249_RS13125 0.27 +1.0 2,640,608 + A4249_RS13125 0.41 -1.1 2,640,608 + A4249_RS13125 0.41 -0.8 2,640,608 + A4249_RS13125 0.41 +0.2 2,640,609 - A4249_RS13125 0.41 -0.8 2,640,609 - A4249_RS13125 0.41 -0.8 2,640,609 - A4249_RS13125 0.41 -0.7
Or see this region's nucleotide sequence