Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12995

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12985 and A4249_RS12990 overlap by 8 nucleotidesA4249_RS12990 and A4249_RS12995 are separated by 42 nucleotidesA4249_RS12995 and A4249_RS13000 overlap by 4 nucleotidesA4249_RS13000 and A4249_RS13005 overlap by 19 nucleotides A4249_RS12985: A4249_RS12985 - GDP-mannose 4,6-dehydratase, at 2,605,075 to 2,606,067 _RS12985 A4249_RS12990: A4249_RS12990 - ABC transporter permease, at 2,606,060 to 2,606,878 _RS12990 A4249_RS12995: A4249_RS12995 - chain-length determining protein, at 2,606,921 to 2,608,084 _RS12995 A4249_RS13000: A4249_RS13000 - ATP-binding cassette domain-containing protein, at 2,608,081 to 2,608,761 _RS13000 A4249_RS13005: A4249_RS13005 - hypothetical protein, at 2,608,743 to 2,609,663 _RS13005 Position (kb) 2606 2607 2608 2609Strain fitness (log2 ratio) -1 0 1 2 3at 2606.026 kb on + strandat 2606.026 kb on + strandat 2606.054 kb on + strandat 2606.876 kb on + strandat 2606.894 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.906 kb on + strandat 2606.915 kb on + strandat 2606.915 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,606,026 + +1.5
2,606,026 + -0.3
2,606,054 + -0.8
2,606,876 + +0.7
2,606,894 + +0.1
2,606,906 + -0.1
2,606,906 + +0.7
2,606,906 + +0.5
2,606,906 + +0.8
2,606,906 + +2.8
2,606,906 + -0.5
2,606,906 + -0.4
2,606,915 + +0.9
2,606,915 + -0.4

Or see this region's nucleotide sequence