Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12165

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12160 and A4249_RS12165 overlap by 32 nucleotidesA4249_RS12165 and A4249_RS12170 are separated by 255 nucleotides A4249_RS12160: A4249_RS12160 - ATP-binding protein, at 2,441,039 to 2,442,649 _RS12160 A4249_RS12165: A4249_RS12165 - response regulator transcription factor, at 2,442,618 to 2,443,322 _RS12165 A4249_RS12170: A4249_RS12170 - hypothetical protein, at 2,443,578 to 2,445,296 _RS12170 Position (kb) 2442 2443 2444Strain fitness (log2 ratio) -1 0 1 2at 2443.344 kb on - strandat 2443.344 kb on - strandat 2443.344 kb on - strandat 2443.377 kb on - strandat 2443.405 kb on + strandat 2443.406 kb on - strandat 2443.406 kb on - strandat 2443.523 kb on - strandat 2443.552 kb on - strandat 2443.552 kb on - strandat 2443.552 kb on - strandat 2443.596 kb on + strandat 2443.596 kb on + strandat 2443.597 kb on - strandat 2443.605 kb on + strandat 2443.605 kb on + strandat 2443.605 kb on + strandat 2443.605 kb on + strandat 2443.605 kb on + strandat 2443.605 kb on + strandat 2443.606 kb on - strandat 2443.606 kb on - strandat 2443.606 kb on - strandat 2443.606 kb on - strandat 2443.606 kb on - strandat 2443.606 kb on - strandat 2443.860 kb on + strand, within A4249_RS12170at 2443.860 kb on + strand, within A4249_RS12170at 2443.860 kb on + strand, within A4249_RS12170at 2443.861 kb on - strand, within A4249_RS12170at 2443.861 kb on - strand, within A4249_RS12170at 2444.067 kb on + strand, within A4249_RS12170at 2444.067 kb on + strand, within A4249_RS12170

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,443,344 - -1.0
2,443,344 - -1.4
2,443,344 - +1.4
2,443,377 - +1.1
2,443,405 + +0.3
2,443,406 - +0.1
2,443,406 - +0.5
2,443,523 - -0.4
2,443,552 - +0.3
2,443,552 - -0.6
2,443,552 - +0.6
2,443,596 + -0.7
2,443,596 + +0.3
2,443,597 - +0.1
2,443,605 + +0.5
2,443,605 + -0.0
2,443,605 + -0.5
2,443,605 + -0.4
2,443,605 + +1.1
2,443,605 + -0.3
2,443,606 - -0.6
2,443,606 - -0.6
2,443,606 - -1.0
2,443,606 - +0.2
2,443,606 - -0.5
2,443,606 - +0.2
2,443,860 + A4249_RS12170 0.16 +2.4
2,443,860 + A4249_RS12170 0.16 -1.1
2,443,860 + A4249_RS12170 0.16 +0.1
2,443,861 - A4249_RS12170 0.16 -1.1
2,443,861 - A4249_RS12170 0.16 -0.5
2,444,067 + A4249_RS12170 0.28 +0.3
2,444,067 + A4249_RS12170 0.28 +0.4

Or see this region's nucleotide sequence