Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11520

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11515 and A4249_RS11520 are separated by 11 nucleotidesA4249_RS11520 and A4249_RS11525 are separated by 29 nucleotidesA4249_RS11525 and A4249_RS11530 are separated by 99 nucleotides A4249_RS11515: A4249_RS11515 - bifunctional metallophosphatase/5'-nucleotidase, at 2,318,569 to 2,319,996 _RS11515 A4249_RS11520: A4249_RS11520 - class I SAM-dependent methyltransferase, at 2,320,008 to 2,320,625 _RS11520 A4249_RS11525: A4249_RS11525 - DsrE family protein, at 2,320,655 to 2,321,179 _RS11525 A4249_RS11530: A4249_RS11530 - peroxiredoxin, at 2,321,279 to 2,321,929 _RS11530 Position (kb) 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2319.211 kb on - strand, within A4249_RS11515at 2319.211 kb on - strand, within A4249_RS11515at 2319.211 kb on - strand, within A4249_RS11515at 2319.283 kb on + strand, within A4249_RS11515at 2319.283 kb on + strand, within A4249_RS11515at 2319.283 kb on + strand, within A4249_RS11515at 2319.283 kb on + strand, within A4249_RS11515at 2319.284 kb on - strand, within A4249_RS11515at 2319.347 kb on + strand, within A4249_RS11515at 2319.604 kb on + strand, within A4249_RS11515at 2319.604 kb on + strand, within A4249_RS11515at 2319.604 kb on + strand, within A4249_RS11515at 2319.604 kb on + strand, within A4249_RS11515at 2319.605 kb on - strand, within A4249_RS11515at 2319.605 kb on - strand, within A4249_RS11515at 2319.605 kb on - strand, within A4249_RS11515at 2319.605 kb on - strand, within A4249_RS11515at 2319.609 kb on + strand, within A4249_RS11515at 2319.609 kb on + strand, within A4249_RS11515at 2319.609 kb on + strand, within A4249_RS11515at 2319.609 kb on + strand, within A4249_RS11515at 2319.609 kb on + strand, within A4249_RS11515at 2319.610 kb on - strand, within A4249_RS11515at 2319.610 kb on - strand, within A4249_RS11515at 2319.610 kb on - strand, within A4249_RS11515at 2319.712 kb on + strand, within A4249_RS11515at 2319.713 kb on - strand, within A4249_RS11515at 2319.730 kb on + strand, within A4249_RS11515at 2319.730 kb on + strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.731 kb on - strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.841 kb on + strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.842 kb on - strand, within A4249_RS11515at 2319.951 kb on + strandat 2319.951 kb on + strandat 2319.952 kb on - strandat 2319.952 kb on - strandat 2320.007 kb on + strandat 2320.007 kb on + strandat 2320.008 kb on - strandat 2320.047 kb on + strandat 2320.048 kb on - strandat 2320.048 kb on - strandat 2320.062 kb on + strandat 2320.062 kb on + strandat 2320.062 kb on + strandat 2320.063 kb on - strandat 2320.063 kb on - strandat 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.385 kb on + strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.386 kb on - strand, within A4249_RS11520at 2320.452 kb on + strand, within A4249_RS11520at 2320.488 kb on + strand, within A4249_RS11520at 2320.488 kb on + strand, within A4249_RS11520at 2320.489 kb on - strand, within A4249_RS11520at 2320.489 kb on - strand, within A4249_RS11520at 2320.790 kb on + strand, within A4249_RS11525at 2320.790 kb on + strand, within A4249_RS11525at 2320.791 kb on - strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.873 kb on + strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2320.874 kb on - strand, within A4249_RS11525at 2321.160 kb on - strandat 2321.160 kb on - strandat 2321.240 kb on - strandat 2321.272 kb on + strandat 2321.273 kb on - strandat 2321.273 kb on - strandat 2321.360 kb on + strand, within A4249_RS11530at 2321.493 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.514 kb on + strand, within A4249_RS11530at 2321.515 kb on - strand, within A4249_RS11530at 2321.603 kb on + strand, within A4249_RS11530at 2321.603 kb on + strand, within A4249_RS11530

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,319,211 - A4249_RS11515 0.45 +0.4
2,319,211 - A4249_RS11515 0.45 -0.0
2,319,211 - A4249_RS11515 0.45 +0.2
2,319,283 + A4249_RS11515 0.50 -0.8
2,319,283 + A4249_RS11515 0.50 +0.4
2,319,283 + A4249_RS11515 0.50 +0.1
2,319,283 + A4249_RS11515 0.50 -1.3
2,319,284 - A4249_RS11515 0.50 +0.5
2,319,347 + A4249_RS11515 0.54 -0.4
2,319,604 + A4249_RS11515 0.72 +0.6
2,319,604 + A4249_RS11515 0.72 -1.1
2,319,604 + A4249_RS11515 0.72 -0.0
2,319,604 + A4249_RS11515 0.72 -1.4
2,319,605 - A4249_RS11515 0.73 -0.3
2,319,605 - A4249_RS11515 0.73 +0.3
2,319,605 - A4249_RS11515 0.73 +0.1
2,319,605 - A4249_RS11515 0.73 -0.5
2,319,609 + A4249_RS11515 0.73 -0.2
2,319,609 + A4249_RS11515 0.73 +1.4
2,319,609 + A4249_RS11515 0.73 +0.4
2,319,609 + A4249_RS11515 0.73 -0.1
2,319,609 + A4249_RS11515 0.73 -0.9
2,319,610 - A4249_RS11515 0.73 -0.8
2,319,610 - A4249_RS11515 0.73 +0.7
2,319,610 - A4249_RS11515 0.73 -0.0
2,319,712 + A4249_RS11515 0.80 -1.7
2,319,713 - A4249_RS11515 0.80 +0.4
2,319,730 + A4249_RS11515 0.81 +0.0
2,319,730 + A4249_RS11515 0.81 +1.0
2,319,731 - A4249_RS11515 0.81 +0.9
2,319,731 - A4249_RS11515 0.81 +0.3
2,319,731 - A4249_RS11515 0.81 -1.0
2,319,841 + A4249_RS11515 0.89 +0.3
2,319,841 + A4249_RS11515 0.89 -0.7
2,319,841 + A4249_RS11515 0.89 -0.7
2,319,841 + A4249_RS11515 0.89 +0.4
2,319,842 - A4249_RS11515 0.89 -0.7
2,319,842 - A4249_RS11515 0.89 -1.0
2,319,842 - A4249_RS11515 0.89 -0.5
2,319,842 - A4249_RS11515 0.89 +0.7
2,319,842 - A4249_RS11515 0.89 -0.8
2,319,951 + -0.3
2,319,951 + -0.8
2,319,952 - +0.5
2,319,952 - -0.6
2,320,007 + -0.2
2,320,007 + -0.1
2,320,008 - +0.5
2,320,047 + +0.4
2,320,048 - +0.9
2,320,048 - -1.0
2,320,062 + -1.0
2,320,062 + +0.6
2,320,062 + -0.3
2,320,063 - +0.7
2,320,063 - +0.4
2,320,385 + A4249_RS11520 0.61 -0.5
2,320,385 + A4249_RS11520 0.61 +1.0
2,320,385 + A4249_RS11520 0.61 +0.9
2,320,385 + A4249_RS11520 0.61 -0.2
2,320,385 + A4249_RS11520 0.61 +0.2
2,320,385 + A4249_RS11520 0.61 -0.6
2,320,386 - A4249_RS11520 0.61 -1.0
2,320,386 - A4249_RS11520 0.61 -2.4
2,320,386 - A4249_RS11520 0.61 -0.7
2,320,386 - A4249_RS11520 0.61 -1.2
2,320,386 - A4249_RS11520 0.61 +0.0
2,320,452 + A4249_RS11520 0.72 -1.2
2,320,488 + A4249_RS11520 0.78 -1.4
2,320,488 + A4249_RS11520 0.78 -0.1
2,320,489 - A4249_RS11520 0.78 -0.4
2,320,489 - A4249_RS11520 0.78 -1.3
2,320,790 + A4249_RS11525 0.26 +0.3
2,320,790 + A4249_RS11525 0.26 -0.2
2,320,791 - A4249_RS11525 0.26 -1.0
2,320,873 + A4249_RS11525 0.42 -1.0
2,320,873 + A4249_RS11525 0.42 -1.1
2,320,873 + A4249_RS11525 0.42 -0.1
2,320,873 + A4249_RS11525 0.42 +0.1
2,320,873 + A4249_RS11525 0.42 +0.5
2,320,874 - A4249_RS11525 0.42 +0.6
2,320,874 - A4249_RS11525 0.42 +0.1
2,320,874 - A4249_RS11525 0.42 +0.1
2,321,160 - -0.6
2,321,160 - -0.0
2,321,240 - +0.3
2,321,272 + -0.2
2,321,273 - +0.4
2,321,273 - -1.0
2,321,360 + A4249_RS11530 0.12 +0.5
2,321,493 + A4249_RS11530 0.33 -1.4
2,321,514 + A4249_RS11530 0.36 +0.4
2,321,514 + A4249_RS11530 0.36 +0.3
2,321,514 + A4249_RS11530 0.36 +0.4
2,321,514 + A4249_RS11530 0.36 +0.4
2,321,515 - A4249_RS11530 0.36 -0.5
2,321,603 + A4249_RS11530 0.50 -0.7
2,321,603 + A4249_RS11530 0.50 -1.5

Or see this region's nucleotide sequence