Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11515 and A4249_RS11520 are separated by 11 nucleotides A4249_RS11520 and A4249_RS11525 are separated by 29 nucleotides A4249_RS11525 and A4249_RS11530 are separated by 99 nucleotides
A4249_RS11515: A4249_RS11515 - bifunctional metallophosphatase/5'-nucleotidase, at 2,318,569 to 2,319,996
_RS11515
A4249_RS11520: A4249_RS11520 - class I SAM-dependent methyltransferase, at 2,320,008 to 2,320,625
_RS11520
A4249_RS11525: A4249_RS11525 - DsrE family protein, at 2,320,655 to 2,321,179
_RS11525
A4249_RS11530: A4249_RS11530 - peroxiredoxin, at 2,321,279 to 2,321,929
_RS11530
Position (kb)
2320
2321 Strain fitness (log2 ratio)
-2
-1
0
1 at 2319.211 kb on - strand, within A4249_RS11515 at 2319.211 kb on - strand, within A4249_RS11515 at 2319.211 kb on - strand, within A4249_RS11515 at 2319.283 kb on + strand, within A4249_RS11515 at 2319.283 kb on + strand, within A4249_RS11515 at 2319.283 kb on + strand, within A4249_RS11515 at 2319.283 kb on + strand, within A4249_RS11515 at 2319.284 kb on - strand, within A4249_RS11515 at 2319.347 kb on + strand, within A4249_RS11515 at 2319.604 kb on + strand, within A4249_RS11515 at 2319.604 kb on + strand, within A4249_RS11515 at 2319.604 kb on + strand, within A4249_RS11515 at 2319.604 kb on + strand, within A4249_RS11515 at 2319.605 kb on - strand, within A4249_RS11515 at 2319.605 kb on - strand, within A4249_RS11515 at 2319.605 kb on - strand, within A4249_RS11515 at 2319.605 kb on - strand, within A4249_RS11515 at 2319.609 kb on + strand, within A4249_RS11515 at 2319.609 kb on + strand, within A4249_RS11515 at 2319.609 kb on + strand, within A4249_RS11515 at 2319.609 kb on + strand, within A4249_RS11515 at 2319.609 kb on + strand, within A4249_RS11515 at 2319.610 kb on - strand, within A4249_RS11515 at 2319.610 kb on - strand, within A4249_RS11515 at 2319.610 kb on - strand, within A4249_RS11515 at 2319.712 kb on + strand, within A4249_RS11515 at 2319.713 kb on - strand, within A4249_RS11515 at 2319.730 kb on + strand, within A4249_RS11515 at 2319.730 kb on + strand, within A4249_RS11515 at 2319.731 kb on - strand, within A4249_RS11515 at 2319.731 kb on - strand, within A4249_RS11515 at 2319.731 kb on - strand, within A4249_RS11515 at 2319.841 kb on + strand, within A4249_RS11515 at 2319.841 kb on + strand, within A4249_RS11515 at 2319.841 kb on + strand, within A4249_RS11515 at 2319.841 kb on + strand, within A4249_RS11515 at 2319.842 kb on - strand, within A4249_RS11515 at 2319.842 kb on - strand, within A4249_RS11515 at 2319.842 kb on - strand, within A4249_RS11515 at 2319.842 kb on - strand, within A4249_RS11515 at 2319.842 kb on - strand, within A4249_RS11515 at 2319.951 kb on + strand at 2319.951 kb on + strand at 2319.952 kb on - strand at 2319.952 kb on - strand at 2320.007 kb on + strand at 2320.007 kb on + strand at 2320.008 kb on - strand at 2320.047 kb on + strand at 2320.048 kb on - strand at 2320.048 kb on - strand at 2320.062 kb on + strand at 2320.062 kb on + strand at 2320.062 kb on + strand at 2320.063 kb on - strand at 2320.063 kb on - strand at 2320.385 kb on + strand, within A4249_RS11520 at 2320.385 kb on + strand, within A4249_RS11520 at 2320.385 kb on + strand, within A4249_RS11520 at 2320.385 kb on + strand, within A4249_RS11520 at 2320.385 kb on + strand, within A4249_RS11520 at 2320.385 kb on + strand, within A4249_RS11520 at 2320.386 kb on - strand, within A4249_RS11520 at 2320.386 kb on - strand, within A4249_RS11520 at 2320.386 kb on - strand, within A4249_RS11520 at 2320.386 kb on - strand, within A4249_RS11520 at 2320.386 kb on - strand, within A4249_RS11520 at 2320.452 kb on + strand, within A4249_RS11520 at 2320.488 kb on + strand, within A4249_RS11520 at 2320.488 kb on + strand, within A4249_RS11520 at 2320.489 kb on - strand, within A4249_RS11520 at 2320.489 kb on - strand, within A4249_RS11520 at 2320.790 kb on + strand, within A4249_RS11525 at 2320.790 kb on + strand, within A4249_RS11525 at 2320.791 kb on - strand, within A4249_RS11525 at 2320.873 kb on + strand, within A4249_RS11525 at 2320.873 kb on + strand, within A4249_RS11525 at 2320.873 kb on + strand, within A4249_RS11525 at 2320.873 kb on + strand, within A4249_RS11525 at 2320.873 kb on + strand, within A4249_RS11525 at 2320.874 kb on - strand, within A4249_RS11525 at 2320.874 kb on - strand, within A4249_RS11525 at 2320.874 kb on - strand, within A4249_RS11525 at 2321.160 kb on - strand at 2321.160 kb on - strand at 2321.240 kb on - strand at 2321.272 kb on + strand at 2321.273 kb on - strand at 2321.273 kb on - strand at 2321.360 kb on + strand, within A4249_RS11530 at 2321.493 kb on + strand, within A4249_RS11530 at 2321.514 kb on + strand, within A4249_RS11530 at 2321.514 kb on + strand, within A4249_RS11530 at 2321.514 kb on + strand, within A4249_RS11530 at 2321.514 kb on + strand, within A4249_RS11530 at 2321.515 kb on - strand, within A4249_RS11530 at 2321.603 kb on + strand, within A4249_RS11530 at 2321.603 kb on + strand, within A4249_RS11530
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 2,319,211 - A4249_RS11515 0.45 +0.4 2,319,211 - A4249_RS11515 0.45 -0.0 2,319,211 - A4249_RS11515 0.45 +0.2 2,319,283 + A4249_RS11515 0.50 -0.8 2,319,283 + A4249_RS11515 0.50 +0.4 2,319,283 + A4249_RS11515 0.50 +0.1 2,319,283 + A4249_RS11515 0.50 -1.3 2,319,284 - A4249_RS11515 0.50 +0.5 2,319,347 + A4249_RS11515 0.54 -0.4 2,319,604 + A4249_RS11515 0.72 +0.6 2,319,604 + A4249_RS11515 0.72 -1.1 2,319,604 + A4249_RS11515 0.72 -0.0 2,319,604 + A4249_RS11515 0.72 -1.4 2,319,605 - A4249_RS11515 0.73 -0.3 2,319,605 - A4249_RS11515 0.73 +0.3 2,319,605 - A4249_RS11515 0.73 +0.1 2,319,605 - A4249_RS11515 0.73 -0.5 2,319,609 + A4249_RS11515 0.73 -0.2 2,319,609 + A4249_RS11515 0.73 +1.4 2,319,609 + A4249_RS11515 0.73 +0.4 2,319,609 + A4249_RS11515 0.73 -0.1 2,319,609 + A4249_RS11515 0.73 -0.9 2,319,610 - A4249_RS11515 0.73 -0.8 2,319,610 - A4249_RS11515 0.73 +0.7 2,319,610 - A4249_RS11515 0.73 -0.0 2,319,712 + A4249_RS11515 0.80 -1.7 2,319,713 - A4249_RS11515 0.80 +0.4 2,319,730 + A4249_RS11515 0.81 +0.0 2,319,730 + A4249_RS11515 0.81 +1.0 2,319,731 - A4249_RS11515 0.81 +0.9 2,319,731 - A4249_RS11515 0.81 +0.3 2,319,731 - A4249_RS11515 0.81 -1.0 2,319,841 + A4249_RS11515 0.89 +0.3 2,319,841 + A4249_RS11515 0.89 -0.7 2,319,841 + A4249_RS11515 0.89 -0.7 2,319,841 + A4249_RS11515 0.89 +0.4 2,319,842 - A4249_RS11515 0.89 -0.7 2,319,842 - A4249_RS11515 0.89 -1.0 2,319,842 - A4249_RS11515 0.89 -0.5 2,319,842 - A4249_RS11515 0.89 +0.7 2,319,842 - A4249_RS11515 0.89 -0.8 2,319,951 + -0.3 2,319,951 + -0.8 2,319,952 - +0.5 2,319,952 - -0.6 2,320,007 + -0.2 2,320,007 + -0.1 2,320,008 - +0.5 2,320,047 + +0.4 2,320,048 - +0.9 2,320,048 - -1.0 2,320,062 + -1.0 2,320,062 + +0.6 2,320,062 + -0.3 2,320,063 - +0.7 2,320,063 - +0.4 2,320,385 + A4249_RS11520 0.61 -0.5 2,320,385 + A4249_RS11520 0.61 +1.0 2,320,385 + A4249_RS11520 0.61 +0.9 2,320,385 + A4249_RS11520 0.61 -0.2 2,320,385 + A4249_RS11520 0.61 +0.2 2,320,385 + A4249_RS11520 0.61 -0.6 2,320,386 - A4249_RS11520 0.61 -1.0 2,320,386 - A4249_RS11520 0.61 -2.4 2,320,386 - A4249_RS11520 0.61 -0.7 2,320,386 - A4249_RS11520 0.61 -1.2 2,320,386 - A4249_RS11520 0.61 +0.0 2,320,452 + A4249_RS11520 0.72 -1.2 2,320,488 + A4249_RS11520 0.78 -1.4 2,320,488 + A4249_RS11520 0.78 -0.1 2,320,489 - A4249_RS11520 0.78 -0.4 2,320,489 - A4249_RS11520 0.78 -1.3 2,320,790 + A4249_RS11525 0.26 +0.3 2,320,790 + A4249_RS11525 0.26 -0.2 2,320,791 - A4249_RS11525 0.26 -1.0 2,320,873 + A4249_RS11525 0.42 -1.0 2,320,873 + A4249_RS11525 0.42 -1.1 2,320,873 + A4249_RS11525 0.42 -0.1 2,320,873 + A4249_RS11525 0.42 +0.1 2,320,873 + A4249_RS11525 0.42 +0.5 2,320,874 - A4249_RS11525 0.42 +0.6 2,320,874 - A4249_RS11525 0.42 +0.1 2,320,874 - A4249_RS11525 0.42 +0.1 2,321,160 - -0.6 2,321,160 - -0.0 2,321,240 - +0.3 2,321,272 + -0.2 2,321,273 - +0.4 2,321,273 - -1.0 2,321,360 + A4249_RS11530 0.12 +0.5 2,321,493 + A4249_RS11530 0.33 -1.4 2,321,514 + A4249_RS11530 0.36 +0.4 2,321,514 + A4249_RS11530 0.36 +0.3 2,321,514 + A4249_RS11530 0.36 +0.4 2,321,514 + A4249_RS11530 0.36 +0.4 2,321,515 - A4249_RS11530 0.36 -0.5 2,321,603 + A4249_RS11530 0.50 -0.7 2,321,603 + A4249_RS11530 0.50 -1.5
Or see this region's nucleotide sequence