Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11320 and A4249_RS11325 overlap by 4 nucleotides A4249_RS11325 and A4249_RS11330 overlap by 4 nucleotides A4249_RS11330 and A4249_RS11335 are separated by 50 nucleotides A4249_RS11335 and A4249_RS11340 overlap by 4 nucleotides
A4249_RS11320: A4249_RS11320 - tryptophan synthase subunit alpha, at 2,283,073 to 2,283,915
_RS11320
A4249_RS11325: A4249_RS11325 - hypothetical protein, at 2,283,912 to 2,284,379
_RS11325
A4249_RS11330: A4249_RS11330 - tryptophan synthase subunit beta, at 2,284,376 to 2,285,605
_RS11330
A4249_RS11335: A4249_RS11335 - phosphoribosylanthranilate isomerase, at 2,285,656 to 2,286,294
_RS11335
A4249_RS11340: A4249_RS11340 - type II toxin-antitoxin system VapC family toxin, at 2,286,291 to 2,286,704
_RS11340
Position (kb)
2284
2285
2286 Strain fitness (log2 ratio)
-1
0
1 at 2284.040 kb on - strand, within A4249_RS11325 at 2284.155 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2284.157 kb on - strand, within A4249_RS11325 at 2286.338 kb on + strand, within A4249_RS11340 at 2286.338 kb on + strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.388 kb on - strand, within A4249_RS11340 at 2286.388 kb on - strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.453 kb on - strand, within A4249_RS11340 at 2286.462 kb on + strand, within A4249_RS11340
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 2,284,040 - A4249_RS11325 0.27 +0.1 2,284,155 - A4249_RS11325 0.52 -0.1 2,284,157 - A4249_RS11325 0.52 -0.2 2,284,157 - A4249_RS11325 0.52 -0.9 2,284,157 - A4249_RS11325 0.52 +0.2 2,284,157 - A4249_RS11325 0.52 -1.6 2,284,157 - A4249_RS11325 0.52 +1.3 2,284,157 - A4249_RS11325 0.52 +0.5 2,284,157 - A4249_RS11325 0.52 +0.2 2,284,157 - A4249_RS11325 0.52 -0.5 2,284,157 - A4249_RS11325 0.52 -1.0 2,284,157 - A4249_RS11325 0.52 -0.5 2,284,157 - A4249_RS11325 0.52 +0.6 2,286,338 + A4249_RS11340 0.11 -0.1 2,286,338 + A4249_RS11340 0.11 -1.0 2,286,339 - A4249_RS11340 0.12 +0.4 2,286,339 - A4249_RS11340 0.12 -0.6 2,286,339 - A4249_RS11340 0.12 +0.4 2,286,339 - A4249_RS11340 0.12 +0.7 2,286,387 + A4249_RS11340 0.23 +0.7 2,286,387 + A4249_RS11340 0.23 -0.0 2,286,387 + A4249_RS11340 0.23 -0.7 2,286,387 + A4249_RS11340 0.23 +0.0 2,286,387 + A4249_RS11340 0.23 +1.2 2,286,388 - A4249_RS11340 0.23 -0.0 2,286,388 - A4249_RS11340 0.23 -0.5 2,286,450 + A4249_RS11340 0.38 +1.4 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 +0.7 2,286,450 + A4249_RS11340 0.38 -0.1 2,286,450 + A4249_RS11340 0.38 +0.3 2,286,450 + A4249_RS11340 0.38 +0.3 2,286,450 + A4249_RS11340 0.38 -0.9 2,286,450 + A4249_RS11340 0.38 +0.6 2,286,450 + A4249_RS11340 0.38 -0.7 2,286,451 - A4249_RS11340 0.39 -0.2 2,286,451 - A4249_RS11340 0.39 -0.7 2,286,451 - A4249_RS11340 0.39 +0.4 2,286,451 - A4249_RS11340 0.39 -0.6 2,286,451 - A4249_RS11340 0.39 -0.0 2,286,451 - A4249_RS11340 0.39 +0.1 2,286,451 - A4249_RS11340 0.39 -1.0 2,286,451 - A4249_RS11340 0.39 +1.0 2,286,451 - A4249_RS11340 0.39 +0.7 2,286,453 - A4249_RS11340 0.39 -0.6 2,286,462 + A4249_RS11340 0.41 +0.7
Or see this region's nucleotide sequence