Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11330

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11320 and A4249_RS11325 overlap by 4 nucleotidesA4249_RS11325 and A4249_RS11330 overlap by 4 nucleotidesA4249_RS11330 and A4249_RS11335 are separated by 50 nucleotidesA4249_RS11335 and A4249_RS11340 overlap by 4 nucleotides A4249_RS11320: A4249_RS11320 - tryptophan synthase subunit alpha, at 2,283,073 to 2,283,915 _RS11320 A4249_RS11325: A4249_RS11325 - hypothetical protein, at 2,283,912 to 2,284,379 _RS11325 A4249_RS11330: A4249_RS11330 - tryptophan synthase subunit beta, at 2,284,376 to 2,285,605 _RS11330 A4249_RS11335: A4249_RS11335 - phosphoribosylanthranilate isomerase, at 2,285,656 to 2,286,294 _RS11335 A4249_RS11340: A4249_RS11340 - type II toxin-antitoxin system VapC family toxin, at 2,286,291 to 2,286,704 _RS11340 Position (kb) 2284 2285 2286Strain fitness (log2 ratio) -1 0 1at 2284.040 kb on - strand, within A4249_RS11325at 2284.155 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2284.157 kb on - strand, within A4249_RS11325at 2286.338 kb on + strand, within A4249_RS11340at 2286.338 kb on + strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.388 kb on - strand, within A4249_RS11340at 2286.388 kb on - strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.453 kb on - strand, within A4249_RS11340at 2286.462 kb on + strand, within A4249_RS11340

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,284,040 - A4249_RS11325 0.27 +0.1
2,284,155 - A4249_RS11325 0.52 -0.1
2,284,157 - A4249_RS11325 0.52 -0.2
2,284,157 - A4249_RS11325 0.52 -0.9
2,284,157 - A4249_RS11325 0.52 +0.2
2,284,157 - A4249_RS11325 0.52 -1.6
2,284,157 - A4249_RS11325 0.52 +1.3
2,284,157 - A4249_RS11325 0.52 +0.5
2,284,157 - A4249_RS11325 0.52 +0.2
2,284,157 - A4249_RS11325 0.52 -0.5
2,284,157 - A4249_RS11325 0.52 -1.0
2,284,157 - A4249_RS11325 0.52 -0.5
2,284,157 - A4249_RS11325 0.52 +0.6
2,286,338 + A4249_RS11340 0.11 -0.1
2,286,338 + A4249_RS11340 0.11 -1.0
2,286,339 - A4249_RS11340 0.12 +0.4
2,286,339 - A4249_RS11340 0.12 -0.6
2,286,339 - A4249_RS11340 0.12 +0.4
2,286,339 - A4249_RS11340 0.12 +0.7
2,286,387 + A4249_RS11340 0.23 +0.7
2,286,387 + A4249_RS11340 0.23 -0.0
2,286,387 + A4249_RS11340 0.23 -0.7
2,286,387 + A4249_RS11340 0.23 +0.0
2,286,387 + A4249_RS11340 0.23 +1.2
2,286,388 - A4249_RS11340 0.23 -0.0
2,286,388 - A4249_RS11340 0.23 -0.5
2,286,450 + A4249_RS11340 0.38 +1.4
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 +0.7
2,286,450 + A4249_RS11340 0.38 -0.1
2,286,450 + A4249_RS11340 0.38 +0.3
2,286,450 + A4249_RS11340 0.38 +0.3
2,286,450 + A4249_RS11340 0.38 -0.9
2,286,450 + A4249_RS11340 0.38 +0.6
2,286,450 + A4249_RS11340 0.38 -0.7
2,286,451 - A4249_RS11340 0.39 -0.2
2,286,451 - A4249_RS11340 0.39 -0.7
2,286,451 - A4249_RS11340 0.39 +0.4
2,286,451 - A4249_RS11340 0.39 -0.6
2,286,451 - A4249_RS11340 0.39 -0.0
2,286,451 - A4249_RS11340 0.39 +0.1
2,286,451 - A4249_RS11340 0.39 -1.0
2,286,451 - A4249_RS11340 0.39 +1.0
2,286,451 - A4249_RS11340 0.39 +0.7
2,286,453 - A4249_RS11340 0.39 -0.6
2,286,462 + A4249_RS11340 0.41 +0.7

Or see this region's nucleotide sequence