Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10890

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10885 and A4249_RS10890 are separated by 0 nucleotidesA4249_RS10890 and A4249_RS10895 are separated by 23 nucleotidesA4249_RS10895 and A4249_RS10900 are separated by 328 nucleotides A4249_RS10885: A4249_RS10885 - hypothetical protein, at 2,189,676 to 2,190,827 _RS10885 A4249_RS10890: A4249_RS10890 - large-conductance mechanosensitive channel protein MscL, at 2,190,828 to 2,191,250 _RS10890 A4249_RS10895: A4249_RS10895 - integration host factor subunit beta, at 2,191,274 to 2,191,564 _RS10895 A4249_RS10900: A4249_RS10900 - 30S ribosomal protein S1, at 2,191,893 to 2,193,596 _RS10900 Position (kb) 2190 2191 2192Strain fitness (log2 ratio) -1 0 1 2at 2189.887 kb on - strand, within A4249_RS10885at 2190.006 kb on + strand, within A4249_RS10885at 2190.006 kb on + strand, within A4249_RS10885at 2190.007 kb on - strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.042 kb on + strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.043 kb on - strand, within A4249_RS10885at 2190.283 kb on - strand, within A4249_RS10885at 2190.283 kb on - strand, within A4249_RS10885at 2190.475 kb on - strand, within A4249_RS10885at 2190.483 kb on - strand, within A4249_RS10885at 2190.483 kb on - strand, within A4249_RS10885at 2190.483 kb on - strand, within A4249_RS10885at 2190.483 kb on - strand, within A4249_RS10885at 2190.544 kb on + strand, within A4249_RS10885at 2190.732 kb on + strandat 2190.733 kb on - strandat 2190.764 kb on + strandat 2190.764 kb on + strandat 2190.765 kb on - strandat 2190.765 kb on - strandat 2191.018 kb on + strand, within A4249_RS10890at 2191.019 kb on - strand, within A4249_RS10890at 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.270 kb on + strandat 2191.271 kb on - strandat 2191.819 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,189,887 - A4249_RS10885 0.18 +0.6
2,190,006 + A4249_RS10885 0.29 -0.6
2,190,006 + A4249_RS10885 0.29 -0.4
2,190,007 - A4249_RS10885 0.29 +1.4
2,190,042 + A4249_RS10885 0.32 -1.2
2,190,042 + A4249_RS10885 0.32 +0.1
2,190,042 + A4249_RS10885 0.32 +0.8
2,190,043 - A4249_RS10885 0.32 -0.3
2,190,043 - A4249_RS10885 0.32 -0.3
2,190,043 - A4249_RS10885 0.32 -0.4
2,190,283 - A4249_RS10885 0.53 -0.1
2,190,283 - A4249_RS10885 0.53 -1.0
2,190,475 - A4249_RS10885 0.69 -0.8
2,190,483 - A4249_RS10885 0.70 -1.2
2,190,483 - A4249_RS10885 0.70 +0.1
2,190,483 - A4249_RS10885 0.70 -0.6
2,190,483 - A4249_RS10885 0.70 +1.1
2,190,544 + A4249_RS10885 0.75 -0.9
2,190,732 + -1.1
2,190,733 - -0.7
2,190,764 + -0.6
2,190,764 + +0.2
2,190,765 - +0.6
2,190,765 - -1.5
2,191,018 + A4249_RS10890 0.45 -0.6
2,191,019 - A4249_RS10890 0.45 -0.5
2,191,270 + +0.8
2,191,270 + +0.0
2,191,270 + +0.1
2,191,270 + +0.3
2,191,271 - +2.1
2,191,819 + -1.6

Or see this region's nucleotide sequence