Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10085

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10080 and A4249_RS10085 are separated by 46 nucleotidesA4249_RS10085 and A4249_RS10090 are separated by 90 nucleotides A4249_RS10080: A4249_RS10080 - phosphoserine transaminase, at 2,024,495 to 2,025,655 _RS10080 A4249_RS10085: A4249_RS10085 - DnaJ C-terminal domain-containing protein, at 2,025,702 to 2,026,628 _RS10085 A4249_RS10090: A4249_RS10090 - glycoside hydrolase/phage tail family protein, at 2,026,719 to 2,030,417 _RS10090 Position (kb) 2025 2026 2027Strain fitness (log2 ratio) -1 0 1 2at 2025.716 kb on + strandat 2025.716 kb on + strandat 2025.716 kb on + strandat 2025.716 kb on + strandat 2025.716 kb on + strandat 2025.716 kb on + strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.717 kb on - strandat 2025.718 kb on + strandat 2025.719 kb on - strandat 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.994 kb on + strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2025.995 kb on - strand, within A4249_RS10085at 2026.396 kb on + strand, within A4249_RS10085at 2026.435 kb on + strand, within A4249_RS10085at 2026.435 kb on + strand, within A4249_RS10085at 2026.559 kb on - strandat 2026.559 kb on - strandat 2026.612 kb on + strandat 2026.612 kb on + strandat 2026.613 kb on - strandat 2026.613 kb on - strandat 2026.613 kb on - strandat 2026.613 kb on - strandat 2026.672 kb on + strandat 2026.672 kb on + strandat 2026.673 kb on - strandat 2026.673 kb on - strandat 2026.673 kb on - strandat 2026.673 kb on - strandat 2026.673 kb on - strandat 2026.712 kb on + strandat 2026.712 kb on + strandat 2026.713 kb on - strandat 2026.713 kb on - strandat 2026.713 kb on - strandat 2026.713 kb on - strandat 2026.713 kb on - strandat 2026.743 kb on + strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.744 kb on - strandat 2026.847 kb on + strandat 2026.847 kb on + strandat 2026.847 kb on + strandat 2026.847 kb on + strandat 2026.848 kb on - strandat 2026.848 kb on - strandat 2026.848 kb on - strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.852 kb on + strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.853 kb on - strandat 2026.931 kb on + strandat 2026.932 kb on - strandat 2026.932 kb on - strandat 2026.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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2,025,716 + +1.5
2,025,716 + +0.4
2,025,716 + +1.2
2,025,716 + -0.5
2,025,716 + -0.4
2,025,716 + +0.7
2,025,717 - -0.4
2,025,717 - -0.5
2,025,717 - -0.8
2,025,717 - -0.5
2,025,717 - -1.2
2,025,717 - -0.1
2,025,717 - +1.9
2,025,718 + -1.0
2,025,719 - -0.5
2,025,994 + A4249_RS10085 0.31 +1.1
2,025,994 + A4249_RS10085 0.31 -0.2
2,025,994 + A4249_RS10085 0.31 -0.6
2,025,994 + A4249_RS10085 0.31 -1.3
2,025,994 + A4249_RS10085 0.31 +0.2
2,025,994 + A4249_RS10085 0.31 +1.1
2,025,994 + A4249_RS10085 0.31 +2.7
2,025,994 + A4249_RS10085 0.31 -0.8
2,025,995 - A4249_RS10085 0.32 -0.1
2,025,995 - A4249_RS10085 0.32 -0.3
2,025,995 - A4249_RS10085 0.32 +1.5
2,025,995 - A4249_RS10085 0.32 -0.2
2,025,995 - A4249_RS10085 0.32 +0.3
2,025,995 - A4249_RS10085 0.32 -0.6
2,025,995 - A4249_RS10085 0.32 -0.5
2,026,396 + A4249_RS10085 0.75 -0.2
2,026,435 + A4249_RS10085 0.79 -0.2
2,026,435 + A4249_RS10085 0.79 -0.4
2,026,559 - +0.8
2,026,559 - +2.3
2,026,612 + +0.8
2,026,612 + -0.1
2,026,613 - +0.6
2,026,613 - -0.5
2,026,613 - -0.4
2,026,613 - +0.1
2,026,672 + +0.1
2,026,672 + -0.4
2,026,673 - +1.1
2,026,673 - +0.1
2,026,673 - -0.1
2,026,673 - +0.0
2,026,673 - -0.3
2,026,712 + -0.1
2,026,712 + -0.5
2,026,713 - -0.6
2,026,713 - -0.0
2,026,713 - -0.0
2,026,713 - +0.3
2,026,713 - +0.1
2,026,743 + -0.8
2,026,744 - +0.7
2,026,744 - -0.3
2,026,744 - +0.2
2,026,744 - -0.5
2,026,744 - +0.2
2,026,744 - -1.3
2,026,744 - +0.2
2,026,847 + +0.4
2,026,847 + +0.1
2,026,847 + -0.1
2,026,847 + +0.3
2,026,848 - +1.3
2,026,848 - +0.3
2,026,848 - +0.6
2,026,852 + -0.5
2,026,852 + +0.5
2,026,852 + +0.9
2,026,852 + -0.8
2,026,852 + +0.4
2,026,852 + -0.1
2,026,852 + -0.4
2,026,852 + +0.9
2,026,853 - -0.6
2,026,853 - -0.3
2,026,853 - +0.2
2,026,853 - -0.9
2,026,853 - -0.2
2,026,853 - +0.3
2,026,853 - +0.9
2,026,853 - +0.7
2,026,853 - -1.0
2,026,853 - -0.4
2,026,931 + +0.1
2,026,932 - -0.3
2,026,932 - -1.0
2,026,932 - -0.5

Or see this region's nucleotide sequence