Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS10065 and A4249_RS10070 are separated by 47 nucleotides A4249_RS10070 and A4249_RS10075 are separated by 107 nucleotides A4249_RS10075 and A4249_RS10080 are separated by 75 nucleotides
A4249_RS10065: A4249_RS10065 - RNA polymerase sigma factor RpoH, at 2,021,269 to 2,022,156
_RS10065
A4249_RS10070: A4249_RS10070 - response regulator, at 2,022,204 to 2,023,016
_RS10070
A4249_RS10075: A4249_RS10075 - adenylosuccinate synthase, at 2,023,124 to 2,024,419
_RS10075
A4249_RS10080: A4249_RS10080 - phosphoserine transaminase, at 2,024,495 to 2,025,655
_RS10080
Position (kb)
2023
2024
2025 Strain fitness (log2 ratio)
-2
-1
0
1 at 2022.159 kb on + strand at 2022.160 kb on - strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.199 kb on + strand at 2022.200 kb on - strand at 2022.200 kb on - strand at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.313 kb on + strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.314 kb on - strand, within A4249_RS10070 at 2022.535 kb on + strand, within A4249_RS10070 at 2022.535 kb on + strand, within A4249_RS10070 at 2022.535 kb on + strand, within A4249_RS10070 at 2022.536 kb on - strand, within A4249_RS10070 at 2022.536 kb on - strand, within A4249_RS10070 at 2022.574 kb on + strand, within A4249_RS10070 at 2022.574 kb on + strand, within A4249_RS10070 at 2022.575 kb on - strand, within A4249_RS10070 at 2022.855 kb on + strand, within A4249_RS10070 at 2022.856 kb on - strand, within A4249_RS10070 at 2022.883 kb on + strand, within A4249_RS10070 at 2022.884 kb on - strand, within A4249_RS10070 at 2022.884 kb on - strand, within A4249_RS10070 at 2022.884 kb on - strand, within A4249_RS10070 at 2022.884 kb on - strand, within A4249_RS10070 at 2022.990 kb on + strand at 2022.990 kb on + strand at 2022.990 kb on + strand at 2022.991 kb on - strand at 2023.061 kb on + strand at 2023.062 kb on - strand at 2023.075 kb on + strand at 2023.075 kb on + strand at 2023.075 kb on + strand at 2023.076 kb on - strand at 2023.076 kb on - strand at 2023.076 kb on - strand at 2024.496 kb on + strand at 2024.497 kb on - strand at 2024.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 2,022,159 + +0.6 2,022,160 - +0.9 2,022,199 + +0.6 2,022,199 + -1.6 2,022,199 + +0.2 2,022,199 + -1.2 2,022,199 + -0.3 2,022,199 + -0.9 2,022,199 + +1.0 2,022,200 - +0.4 2,022,200 - -1.1 2,022,313 + A4249_RS10070 0.13 -0.3 2,022,313 + A4249_RS10070 0.13 -0.5 2,022,313 + A4249_RS10070 0.13 +0.3 2,022,313 + A4249_RS10070 0.13 +0.6 2,022,313 + A4249_RS10070 0.13 +0.2 2,022,313 + A4249_RS10070 0.13 -0.5 2,022,313 + A4249_RS10070 0.13 -0.3 2,022,313 + A4249_RS10070 0.13 -0.5 2,022,314 - A4249_RS10070 0.14 +0.0 2,022,314 - A4249_RS10070 0.14 +0.2 2,022,314 - A4249_RS10070 0.14 +0.3 2,022,314 - A4249_RS10070 0.14 +1.1 2,022,314 - A4249_RS10070 0.14 -1.5 2,022,314 - A4249_RS10070 0.14 +0.3 2,022,314 - A4249_RS10070 0.14 -0.4 2,022,314 - A4249_RS10070 0.14 +0.8 2,022,314 - A4249_RS10070 0.14 +0.0 2,022,314 - A4249_RS10070 0.14 +0.1 2,022,535 + A4249_RS10070 0.41 -0.9 2,022,535 + A4249_RS10070 0.41 +1.1 2,022,535 + A4249_RS10070 0.41 +0.8 2,022,536 - A4249_RS10070 0.41 -0.6 2,022,536 - A4249_RS10070 0.41 -0.6 2,022,574 + A4249_RS10070 0.46 -0.4 2,022,574 + A4249_RS10070 0.46 -0.6 2,022,575 - A4249_RS10070 0.46 -2.0 2,022,855 + A4249_RS10070 0.80 +1.1 2,022,856 - A4249_RS10070 0.80 -1.2 2,022,883 + A4249_RS10070 0.84 -0.8 2,022,884 - A4249_RS10070 0.84 +0.3 2,022,884 - A4249_RS10070 0.84 +0.2 2,022,884 - A4249_RS10070 0.84 -0.2 2,022,884 - A4249_RS10070 0.84 -1.3 2,022,990 + +0.6 2,022,990 + -1.9 2,022,990 + -0.2 2,022,991 - -1.0 2,023,061 + -1.6 2,023,062 - -0.8 2,023,075 + -0.2 2,023,075 + +1.6 2,023,075 + -0.7 2,023,076 - +0.2 2,023,076 - +0.4 2,023,076 - +1.4 2,024,496 + -0.6 2,024,497 - +0.5 2,024,497 - +0.0
Or see this region's nucleotide sequence