Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09855 and A4249_RS09860 overlap by 4 nucleotides A4249_RS09860 and A4249_RS09865 are separated by 13 nucleotides A4249_RS09865 and A4249_RS09870 overlap by 4 nucleotides
A4249_RS09855: A4249_RS09855 - prolipoprotein diacylglyceryl transferase, at 1,962,579 to 1,963,454
_RS09855
A4249_RS09860: A4249_RS09860 - SAM-dependent methyltransferase, at 1,963,451 to 1,964,536
_RS09860
A4249_RS09865: A4249_RS09865 - peptidoglycan editing factor PgeF, at 1,964,550 to 1,965,320
_RS09865
A4249_RS09870: A4249_RS09870 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,965,317 to 1,966,216
_RS09870
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1963.445 kb on + strand at 1964.537 kb on + strand at 1964.537 kb on + strand at 1964.537 kb on + strand at 1964.537 kb on + strand at 1964.537 kb on + strand at 1964.538 kb on - strand at 1964.538 kb on - strand at 1964.538 kb on - strand at 1964.538 kb on - strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.539 kb on + strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.540 kb on - strand at 1964.646 kb on + strand, within A4249_RS09865 at 1964.646 kb on + strand, within A4249_RS09865 at 1964.646 kb on + strand, within A4249_RS09865 at 1964.646 kb on + strand, within A4249_RS09865 at 1964.646 kb on + strand, within A4249_RS09865 at 1964.647 kb on - strand, within A4249_RS09865 at 1964.647 kb on - strand, within A4249_RS09865 at 1964.647 kb on - strand, within A4249_RS09865 at 1964.760 kb on + strand, within A4249_RS09865 at 1964.996 kb on - strand, within A4249_RS09865 at 1965.054 kb on + strand, within A4249_RS09865 at 1965.054 kb on + strand, within A4249_RS09865 at 1965.055 kb on - strand, within A4249_RS09865 at 1965.055 kb on - strand, within A4249_RS09865 at 1965.055 kb on - strand, within A4249_RS09865 at 1965.055 kb on - strand, within A4249_RS09865 at 1965.055 kb on - strand, within A4249_RS09865 at 1965.249 kb on + strand at 1965.250 kb on - strand at 1965.318 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,963,445 + +0.2 1,964,537 + +0.1 1,964,537 + -0.5 1,964,537 + -1.0 1,964,537 + -0.7 1,964,537 + +1.3 1,964,538 - -0.2 1,964,538 - -1.0 1,964,538 - -0.4 1,964,538 - +1.2 1,964,539 + +1.0 1,964,539 + +0.6 1,964,539 + -0.6 1,964,539 + -0.4 1,964,539 + -0.1 1,964,539 + -0.8 1,964,539 + +0.5 1,964,539 + +0.3 1,964,539 + +0.3 1,964,539 + -0.6 1,964,539 + -0.1 1,964,539 + -1.5 1,964,540 - -0.7 1,964,540 - -2.3 1,964,540 - +0.0 1,964,540 - -0.0 1,964,540 - +0.4 1,964,540 - +0.2 1,964,540 - -0.4 1,964,540 - -0.6 1,964,540 - -0.9 1,964,540 - +0.3 1,964,540 - -0.2 1,964,540 - -0.2 1,964,540 - +0.4 1,964,540 - +0.7 1,964,540 - -0.7 1,964,540 - -0.3 1,964,540 - -0.6 1,964,540 - -0.2 1,964,646 + A4249_RS09865 0.12 -1.3 1,964,646 + A4249_RS09865 0.12 +0.0 1,964,646 + A4249_RS09865 0.12 +0.3 1,964,646 + A4249_RS09865 0.12 -1.6 1,964,646 + A4249_RS09865 0.12 -1.2 1,964,647 - A4249_RS09865 0.13 +1.1 1,964,647 - A4249_RS09865 0.13 -1.6 1,964,647 - A4249_RS09865 0.13 -0.5 1,964,760 + A4249_RS09865 0.27 +0.8 1,964,996 - A4249_RS09865 0.58 +1.8 1,965,054 + A4249_RS09865 0.65 +0.2 1,965,054 + A4249_RS09865 0.65 -1.1 1,965,055 - A4249_RS09865 0.65 +0.6 1,965,055 - A4249_RS09865 0.65 -0.6 1,965,055 - A4249_RS09865 0.65 -0.2 1,965,055 - A4249_RS09865 0.65 +0.6 1,965,055 - A4249_RS09865 0.65 -0.3 1,965,249 + -0.3 1,965,250 - -0.9 1,965,318 + +0.7
Or see this region's nucleotide sequence