Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09850

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09840 and A4249_RS09845 are separated by 17 nucleotidesA4249_RS09845 and A4249_RS09850 are separated by 73 nucleotidesA4249_RS09850 and A4249_RS09855 are separated by 173 nucleotides A4249_RS09840: A4249_RS09840 - pyrroline-5-carboxylate reductase dimerization domain-containing protein, at 1,960,735 to 1,961,523 _RS09840 A4249_RS09845: A4249_RS09845 - YbjN domain-containing protein, at 1,961,541 to 1,962,044 _RS09845 A4249_RS09850: A4249_RS09850 - accessory factor UbiK family protein, at 1,962,118 to 1,962,405 _RS09850 A4249_RS09855: A4249_RS09855 - prolipoprotein diacylglyceryl transferase, at 1,962,579 to 1,963,454 _RS09855 Position (kb) 1962 1963Strain fitness (log2 ratio) -2 -1 0 1 2at 1961.182 kb on + strand, within A4249_RS09840at 1961.183 kb on - strand, within A4249_RS09840at 1961.183 kb on - strand, within A4249_RS09840at 1961.504 kb on - strandat 1962.447 kb on + strandat 1962.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,961,182 + A4249_RS09840 0.57 -2.0
1,961,183 - A4249_RS09840 0.57 -1.3
1,961,183 - A4249_RS09840 0.57 -0.3
1,961,504 - +2.1
1,962,447 + +1.3
1,962,448 - +0.9

Or see this region's nucleotide sequence