Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09770 and A4249_RS09775 overlap by 1 nucleotides A4249_RS09775 and A4249_RS09780 are separated by 1 nucleotides A4249_RS09780 and A4249_RS09785 overlap by 1 nucleotides
A4249_RS09770: A4249_RS09770 - flagellar motor switch protein FliN, at 1,947,792 to 1,948,124
_RS09770
A4249_RS09775: A4249_RS09775 - flagellar assembly protein FlbE, at 1,948,124 to 1,948,786
_RS09775
A4249_RS09780: A4249_RS09780 - flagellar motor switch protein FliG, at 1,948,788 to 1,949,822
_RS09780
A4249_RS09785: A4249_RS09785 - flagellar basal-body MS-ring/collar protein FliF, at 1,949,822 to 1,951,462
_RS09785
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1948.343 kb on + strand, within A4249_RS09775 at 1948.499 kb on + strand, within A4249_RS09775 at 1948.500 kb on - strand, within A4249_RS09775 at 1948.500 kb on - strand, within A4249_RS09775 at 1948.577 kb on - strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.793 kb on - strand at 1948.793 kb on - strand at 1948.793 kb on - strand at 1948.793 kb on - strand at 1949.417 kb on - strand, within A4249_RS09780 at 1949.431 kb on + strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.432 kb on - strand, within A4249_RS09780 at 1949.569 kb on + strand, within A4249_RS09780 at 1949.569 kb on + strand, within A4249_RS09780 at 1949.569 kb on + strand, within A4249_RS09780 at 1949.569 kb on + strand, within A4249_RS09780 at 1949.569 kb on + strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1949.570 kb on - strand, within A4249_RS09780 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.348 kb on + strand, within A4249_RS09785 at 1950.349 kb on - strand, within A4249_RS09785 at 1950.349 kb on - strand, within A4249_RS09785 at 1950.349 kb on - strand, within A4249_RS09785 at 1950.472 kb on - strand, within A4249_RS09785 at 1950.472 kb on - strand, within A4249_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,948,343 + A4249_RS09775 0.33 -1.0 1,948,499 + A4249_RS09775 0.57 +0.3 1,948,500 - A4249_RS09775 0.57 -0.0 1,948,500 - A4249_RS09775 0.57 -0.5 1,948,577 - A4249_RS09775 0.68 -0.0 1,948,680 + A4249_RS09775 0.84 +0.2 1,948,680 + A4249_RS09775 0.84 +0.9 1,948,680 + A4249_RS09775 0.84 -0.7 1,948,680 + A4249_RS09775 0.84 +0.2 1,948,680 + A4249_RS09775 0.84 +0.4 1,948,680 + A4249_RS09775 0.84 +0.8 1,948,681 - A4249_RS09775 0.84 +0.1 1,948,681 - A4249_RS09775 0.84 -0.2 1,948,681 - A4249_RS09775 0.84 +1.0 1,948,681 - A4249_RS09775 0.84 -0.3 1,948,681 - A4249_RS09775 0.84 +0.3 1,948,792 + -1.2 1,948,792 + -0.7 1,948,792 + -0.8 1,948,792 + +0.6 1,948,793 - +2.1 1,948,793 - -0.2 1,948,793 - +1.2 1,948,793 - -0.9 1,949,417 - A4249_RS09780 0.61 -0.8 1,949,431 + A4249_RS09780 0.62 +1.4 1,949,432 - A4249_RS09780 0.62 -0.3 1,949,432 - A4249_RS09780 0.62 +0.0 1,949,432 - A4249_RS09780 0.62 +0.4 1,949,432 - A4249_RS09780 0.62 +1.9 1,949,432 - A4249_RS09780 0.62 -0.4 1,949,432 - A4249_RS09780 0.62 +0.5 1,949,569 + A4249_RS09780 0.75 -0.1 1,949,569 + A4249_RS09780 0.75 +1.2 1,949,569 + A4249_RS09780 0.75 +0.1 1,949,569 + A4249_RS09780 0.75 -0.3 1,949,569 + A4249_RS09780 0.75 +0.0 1,949,570 - A4249_RS09780 0.76 -1.2 1,949,570 - A4249_RS09780 0.76 +0.4 1,949,570 - A4249_RS09780 0.76 +0.8 1,949,570 - A4249_RS09780 0.76 -0.1 1,949,570 - A4249_RS09780 0.76 +0.2 1,949,570 - A4249_RS09780 0.76 +1.1 1,950,348 + A4249_RS09785 0.32 -0.1 1,950,348 + A4249_RS09785 0.32 +0.5 1,950,348 + A4249_RS09785 0.32 -0.5 1,950,348 + A4249_RS09785 0.32 +0.6 1,950,348 + A4249_RS09785 0.32 -1.1 1,950,348 + A4249_RS09785 0.32 +0.4 1,950,349 - A4249_RS09785 0.32 -0.5 1,950,349 - A4249_RS09785 0.32 -0.8 1,950,349 - A4249_RS09785 0.32 -0.4 1,950,472 - A4249_RS09785 0.40 +0.2 1,950,472 - A4249_RS09785 0.40 +1.3
Or see this region's nucleotide sequence