Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09765 and A4249_RS09770 are separated by 36 nucleotides A4249_RS09770 and A4249_RS09775 overlap by 1 nucleotides A4249_RS09775 and A4249_RS09780 are separated by 1 nucleotides
A4249_RS09765: A4249_RS09765 - sigma-54 dependent transcriptional regulator, at 1,946,343 to 1,947,755
_RS09765
A4249_RS09770: A4249_RS09770 - flagellar motor switch protein FliN, at 1,947,792 to 1,948,124
_RS09770
A4249_RS09775: A4249_RS09775 - flagellar assembly protein FlbE, at 1,948,124 to 1,948,786
_RS09775
A4249_RS09780: A4249_RS09780 - flagellar motor switch protein FliG, at 1,948,788 to 1,949,822
_RS09780
Position (kb)
1947
1948
1949 Strain fitness (log2 ratio)
-1
0
1
2 at 1946.830 kb on + strand, within A4249_RS09765 at 1946.831 kb on - strand, within A4249_RS09765 at 1946.921 kb on - strand, within A4249_RS09765 at 1946.921 kb on - strand, within A4249_RS09765 at 1947.277 kb on + strand, within A4249_RS09765 at 1947.278 kb on - strand, within A4249_RS09765 at 1947.473 kb on - strand, within A4249_RS09765 at 1947.535 kb on - strand, within A4249_RS09765 at 1947.598 kb on + strand, within A4249_RS09765 at 1947.598 kb on + strand, within A4249_RS09765 at 1947.739 kb on - strand at 1947.769 kb on + strand at 1947.769 kb on + strand at 1947.769 kb on + strand at 1947.770 kb on - strand at 1947.770 kb on - strand at 1947.776 kb on + strand at 1947.777 kb on - strand at 1948.343 kb on + strand, within A4249_RS09775 at 1948.499 kb on + strand, within A4249_RS09775 at 1948.500 kb on - strand, within A4249_RS09775 at 1948.500 kb on - strand, within A4249_RS09775 at 1948.577 kb on - strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.680 kb on + strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.681 kb on - strand, within A4249_RS09775 at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.792 kb on + strand at 1948.793 kb on - strand at 1948.793 kb on - strand at 1948.793 kb on - strand at 1948.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,946,830 + A4249_RS09765 0.34 +0.5 1,946,831 - A4249_RS09765 0.35 +1.0 1,946,921 - A4249_RS09765 0.41 +1.1 1,946,921 - A4249_RS09765 0.41 -0.4 1,947,277 + A4249_RS09765 0.66 +0.1 1,947,278 - A4249_RS09765 0.66 +0.3 1,947,473 - A4249_RS09765 0.80 +0.3 1,947,535 - A4249_RS09765 0.84 -1.4 1,947,598 + A4249_RS09765 0.89 -0.1 1,947,598 + A4249_RS09765 0.89 -0.9 1,947,739 - -0.2 1,947,769 + -0.3 1,947,769 + -0.2 1,947,769 + -0.3 1,947,770 - +0.2 1,947,770 - -0.6 1,947,776 + -0.0 1,947,777 - +0.6 1,948,343 + A4249_RS09775 0.33 -1.0 1,948,499 + A4249_RS09775 0.57 +0.3 1,948,500 - A4249_RS09775 0.57 -0.0 1,948,500 - A4249_RS09775 0.57 -0.5 1,948,577 - A4249_RS09775 0.68 -0.0 1,948,680 + A4249_RS09775 0.84 +0.2 1,948,680 + A4249_RS09775 0.84 +0.9 1,948,680 + A4249_RS09775 0.84 -0.7 1,948,680 + A4249_RS09775 0.84 +0.2 1,948,680 + A4249_RS09775 0.84 +0.4 1,948,680 + A4249_RS09775 0.84 +0.8 1,948,681 - A4249_RS09775 0.84 +0.1 1,948,681 - A4249_RS09775 0.84 -0.2 1,948,681 - A4249_RS09775 0.84 +1.0 1,948,681 - A4249_RS09775 0.84 -0.3 1,948,681 - A4249_RS09775 0.84 +0.3 1,948,792 + -1.2 1,948,792 + -0.7 1,948,792 + -0.8 1,948,792 + +0.6 1,948,793 - +2.1 1,948,793 - -0.2 1,948,793 - +1.2 1,948,793 - -0.9
Or see this region's nucleotide sequence