Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09400

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09390 and A4249_RS09395 are separated by 50 nucleotidesA4249_RS09395 and A4249_RS09400 overlap by 4 nucleotidesA4249_RS09400 and A4249_RS09405 are separated by 6 nucleotides A4249_RS09390: A4249_RS09390 - ATP-binding protein, at 1,876,590 to 1,878,185 _RS09390 A4249_RS09395: A4249_RS09395 - SMC-Scp complex subunit ScpB, at 1,878,236 to 1,878,916 _RS09395 A4249_RS09400: A4249_RS09400 - ScpA family protein, at 1,878,913 to 1,879,731 _RS09400 A4249_RS09405: A4249_RS09405 - beta-N-acetylhexosaminidase, at 1,879,738 to 1,880,787 _RS09405 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -2 -1 0 1 2at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.930 kb on - strand, within A4249_RS09390at 1877.930 kb on - strand, within A4249_RS09390at 1878.194 kb on + strandat 1878.194 kb on + strandat 1878.207 kb on - strandat 1878.207 kb on - strandat 1878.207 kb on - strandat 1878.220 kb on + strandat 1878.220 kb on + strandat 1878.221 kb on - strandat 1878.221 kb on - strandat 1878.423 kb on + strand, within A4249_RS09395at 1878.423 kb on + strand, within A4249_RS09395at 1878.423 kb on + strand, within A4249_RS09395at 1878.424 kb on - strand, within A4249_RS09395at 1878.424 kb on - strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.609 kb on + strand, within A4249_RS09395at 1878.610 kb on - strand, within A4249_RS09395at 1878.756 kb on + strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1879.044 kb on + strand, within A4249_RS09400at 1879.044 kb on + strand, within A4249_RS09400at 1879.229 kb on + strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.247 kb on + strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.381 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.476 kb on - strand, within A4249_RS09400at 1879.502 kb on + strand, within A4249_RS09400at 1879.503 kb on - strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.646 kb on + strand, within A4249_RS09400at 1879.647 kb on - strand, within A4249_RS09400at 1879.647 kb on - strand, within A4249_RS09400at 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1880.116 kb on - strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.278 kb on - strand, within A4249_RS09405at 1880.407 kb on + strand, within A4249_RS09405at 1880.407 kb on + strand, within A4249_RS09405

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,877,929 + A4249_RS09390 0.84 +0.3
1,877,929 + A4249_RS09390 0.84 +1.4
1,877,929 + A4249_RS09390 0.84 -0.3
1,877,929 + A4249_RS09390 0.84 -0.8
1,877,930 - A4249_RS09390 0.84 +0.8
1,877,930 - A4249_RS09390 0.84 -0.5
1,878,194 + -1.2
1,878,194 + -1.0
1,878,207 - +0.6
1,878,207 - +1.1
1,878,207 - +0.6
1,878,220 + -1.5
1,878,220 + +0.5
1,878,221 - -0.4
1,878,221 - -0.2
1,878,423 + A4249_RS09395 0.27 -0.2
1,878,423 + A4249_RS09395 0.27 +0.4
1,878,423 + A4249_RS09395 0.27 +0.4
1,878,424 - A4249_RS09395 0.28 +0.9
1,878,424 - A4249_RS09395 0.28 -0.0
1,878,471 + A4249_RS09395 0.35 +2.1
1,878,471 + A4249_RS09395 0.35 +0.8
1,878,471 + A4249_RS09395 0.35 -1.4
1,878,471 + A4249_RS09395 0.35 +0.7
1,878,472 - A4249_RS09395 0.35 +0.4
1,878,472 - A4249_RS09395 0.35 +0.6
1,878,472 - A4249_RS09395 0.35 -0.9
1,878,472 - A4249_RS09395 0.35 -0.2
1,878,472 - A4249_RS09395 0.35 +1.5
1,878,472 - A4249_RS09395 0.35 +1.4
1,878,472 - A4249_RS09395 0.35 +0.8
1,878,472 - A4249_RS09395 0.35 +1.3
1,878,472 - A4249_RS09395 0.35 -0.4
1,878,472 - A4249_RS09395 0.35 -1.3
1,878,472 - A4249_RS09395 0.35 -0.5
1,878,472 - A4249_RS09395 0.35 +0.4
1,878,609 + A4249_RS09395 0.55 -1.0
1,878,610 - A4249_RS09395 0.55 -0.2
1,878,756 + A4249_RS09395 0.76 +0.5
1,878,757 - A4249_RS09395 0.77 -0.9
1,878,757 - A4249_RS09395 0.77 +0.1
1,878,757 - A4249_RS09395 0.77 -0.8
1,878,757 - A4249_RS09395 0.77 +1.4
1,878,959 + -0.7
1,878,959 + -0.5
1,878,959 + +2.3
1,878,959 + +0.0
1,878,959 + -0.3
1,879,044 + A4249_RS09400 0.16 -0.9
1,879,044 + A4249_RS09400 0.16 -2.1
1,879,229 + A4249_RS09400 0.39 +0.5
1,879,230 - A4249_RS09400 0.39 +0.2
1,879,230 - A4249_RS09400 0.39 -1.4
1,879,230 - A4249_RS09400 0.39 -0.7
1,879,230 - A4249_RS09400 0.39 +2.2
1,879,230 - A4249_RS09400 0.39 +0.2
1,879,247 + A4249_RS09400 0.41 -0.6
1,879,248 - A4249_RS09400 0.41 +0.2
1,879,248 - A4249_RS09400 0.41 +0.2
1,879,248 - A4249_RS09400 0.41 -0.5
1,879,248 - A4249_RS09400 0.41 -0.5
1,879,381 + A4249_RS09400 0.57 -0.4
1,879,475 + A4249_RS09400 0.69 +0.3
1,879,475 + A4249_RS09400 0.69 +1.8
1,879,475 + A4249_RS09400 0.69 +0.5
1,879,476 - A4249_RS09400 0.69 +0.4
1,879,502 + A4249_RS09400 0.72 +0.7
1,879,503 - A4249_RS09400 0.72 +1.1
1,879,556 + A4249_RS09400 0.79 +0.5
1,879,556 + A4249_RS09400 0.79 +0.5
1,879,556 + A4249_RS09400 0.79 -0.2
1,879,556 + A4249_RS09400 0.79 -0.3
1,879,556 + A4249_RS09400 0.79 +1.3
1,879,556 + A4249_RS09400 0.79 +1.2
1,879,557 - A4249_RS09400 0.79 +0.6
1,879,557 - A4249_RS09400 0.79 +1.3
1,879,557 - A4249_RS09400 0.79 +0.9
1,879,557 - A4249_RS09400 0.79 -0.9
1,879,646 + A4249_RS09400 0.89 +1.9
1,879,647 - A4249_RS09400 0.90 +0.5
1,879,647 - A4249_RS09400 0.90 -0.5
1,879,731 + -0.2
1,879,731 + +0.1
1,879,731 + +0.1
1,879,731 + +0.8
1,879,731 + -1.5
1,879,731 + +0.7
1,879,731 + +2.0
1,879,732 - +0.4
1,879,732 - -0.5
1,879,732 - +0.3
1,879,732 - -1.2
1,879,732 - -0.9
1,879,739 + +0.8
1,879,739 + +0.7
1,879,739 + +2.1
1,879,739 + -0.3
1,879,739 + -0.6
1,879,740 - -1.4
1,879,740 - -0.1
1,879,740 - +1.7
1,879,740 - -0.7
1,880,116 - A4249_RS09405 0.36 +1.8
1,880,277 + A4249_RS09405 0.51 +0.3
1,880,277 + A4249_RS09405 0.51 -1.1
1,880,277 + A4249_RS09405 0.51 +0.8
1,880,277 + A4249_RS09405 0.51 +0.3
1,880,278 - A4249_RS09405 0.51 +1.5
1,880,407 + A4249_RS09405 0.64 +0.3
1,880,407 + A4249_RS09405 0.64 -1.2

Or see this region's nucleotide sequence