Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS09245 and A4249_RS09250 are separated by 114 nucleotides A4249_RS09250 and A4249_RS09255 are separated by 3 nucleotides A4249_RS09255 and A4249_RS09260 are separated by 62 nucleotides A4249_RS09260 and A4249_RS16800 are separated by 16 nucleotides A4249_RS16800 and A4249_RS09265 are separated by 64 nucleotides
A4249_RS09245: A4249_RS09245 - amidohydrolase family protein, at 1,850,053 to 1,851,378
_RS09245
A4249_RS09250: A4249_RS09250 - murein L,D-transpeptidase catalytic domain family protein, at 1,851,493 to 1,852,185
_RS09250
A4249_RS09255: A4249_RS09255 - phosphoribosylamine--glycine ligase, at 1,852,189 to 1,853,463
_RS09255
A4249_RS09260: A4249_RS09260 - PRC-barrel domain-containing protein, at 1,853,526 to 1,853,957
_RS09260
A4249_RS16800: A4249_RS16800 - hypothetical protein, at 1,853,974 to 1,854,135
_RS16800
A4249_RS09265: A4249_RS09265 - exodeoxyribonuclease VII large subunit, at 1,854,200 to 1,855,795
_RS09265
Position (kb) 1852
1853
1854 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1851.214 kb on - strand, within A4249_RS09245 at 1851.276 kb on + strand at 1851.276 kb on + strand at 1851.332 kb on - strand at 1851.382 kb on + strand at 1851.382 kb on + strand at 1851.516 kb on + strand at 1851.516 kb on + strand at 1851.516 kb on + strand at 1851.516 kb on + strand at 1851.516 kb on + strand at 1851.516 kb on + strand at 1851.517 kb on - strand at 1851.757 kb on + strand, within A4249_RS09250 at 1851.757 kb on + strand, within A4249_RS09250 at 1851.757 kb on + strand, within A4249_RS09250 at 1851.757 kb on + strand, within A4249_RS09250 at 1851.799 kb on + strand, within A4249_RS09250 at 1851.799 kb on + strand, within A4249_RS09250 at 1851.800 kb on - strand, within A4249_RS09250 at 1851.935 kb on - strand, within A4249_RS09250 at 1851.935 kb on - strand, within A4249_RS09250 at 1851.935 kb on - strand, within A4249_RS09250 at 1851.980 kb on + strand, within A4249_RS09250 at 1851.980 kb on + strand, within A4249_RS09250 at 1851.981 kb on - strand, within A4249_RS09250 at 1851.981 kb on - strand, within A4249_RS09250 at 1852.000 kb on + strand, within A4249_RS09250 at 1852.000 kb on + strand, within A4249_RS09250 at 1852.001 kb on - strand, within A4249_RS09250 at 1852.005 kb on + strand, within A4249_RS09250 at 1852.183 kb on + strand at 1852.661 kb on + strand, within A4249_RS09255 at 1852.818 kb on - strand, within A4249_RS09255 at 1853.249 kb on - strand, within A4249_RS09255 at 1853.515 kb on + strand at 1853.515 kb on + strand at 1853.679 kb on + strand, within A4249_RS09260 at 1853.680 kb on - strand, within A4249_RS09260 at 1853.680 kb on - strand, within A4249_RS09260 at 1853.680 kb on - strand, within A4249_RS09260 at 1853.752 kb on + strand, within A4249_RS09260 at 1853.752 kb on + strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.753 kb on - strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.754 kb on + strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.755 kb on - strand, within A4249_RS09260 at 1853.957 kb on + strand at 1853.958 kb on - strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.975 kb on + strand at 1853.976 kb on - strand at 1853.976 kb on - strand at 1853.996 kb on + strand, within A4249_RS16800 at 1853.996 kb on + strand, within A4249_RS16800 at 1853.996 kb on + strand, within A4249_RS16800 at 1853.997 kb on - strand, within A4249_RS16800 at 1853.997 kb on - strand, within A4249_RS16800 at 1853.997 kb on - strand, within A4249_RS16800 at 1853.997 kb on - strand, within A4249_RS16800 at 1854.188 kb on + strand at 1854.188 kb on + strand at 1854.188 kb on + strand at 1854.188 kb on + strand at 1854.189 kb on - strand at 1854.189 kb on - strand at 1854.189 kb on - strand at 1854.189 kb on - strand at 1854.215 kb on + strand at 1854.215 kb on + strand at 1854.215 kb on + strand at 1854.215 kb on + strand at 1854.215 kb on + strand at 1854.215 kb on + strand at 1854.216 kb on - strand at 1854.216 kb on - strand at 1854.216 kb on - strand at 1854.219 kb on + strand at 1854.220 kb on - strand at 1854.220 kb on - strand at 1854.220 kb on - strand at 1854.220 kb on - strand at 1854.383 kb on + strand, within A4249_RS09265 at 1854.383 kb on + strand, within A4249_RS09265 at 1854.383 kb on + strand, within A4249_RS09265 at 1854.384 kb on - strand, within A4249_RS09265 at 1854.384 kb on - strand, within A4249_RS09265
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,851,214 - A4249_RS09245 0.88 -0.1 1,851,276 + -0.9 1,851,276 + -0.7 1,851,332 - +0.8 1,851,382 + -1.9 1,851,382 + +1.2 1,851,516 + +1.6 1,851,516 + +1.1 1,851,516 + +1.1 1,851,516 + +1.3 1,851,516 + +0.3 1,851,516 + +1.8 1,851,517 - +0.3 1,851,757 + A4249_RS09250 0.38 -0.2 1,851,757 + A4249_RS09250 0.38 -0.3 1,851,757 + A4249_RS09250 0.38 -0.2 1,851,757 + A4249_RS09250 0.38 +0.5 1,851,799 + A4249_RS09250 0.44 -0.1 1,851,799 + A4249_RS09250 0.44 +1.1 1,851,800 - A4249_RS09250 0.44 -0.4 1,851,935 - A4249_RS09250 0.64 +0.5 1,851,935 - A4249_RS09250 0.64 +0.5 1,851,935 - A4249_RS09250 0.64 +0.4 1,851,980 + A4249_RS09250 0.70 +1.1 1,851,980 + A4249_RS09250 0.70 +0.5 1,851,981 - A4249_RS09250 0.70 +2.1 1,851,981 - A4249_RS09250 0.70 -0.6 1,852,000 + A4249_RS09250 0.73 -0.4 1,852,000 + A4249_RS09250 0.73 -0.6 1,852,001 - A4249_RS09250 0.73 +1.7 1,852,005 + A4249_RS09250 0.74 +0.1 1,852,183 + -1.9 1,852,661 + A4249_RS09255 0.37 +0.8 1,852,818 - A4249_RS09255 0.49 +1.5 1,853,249 - A4249_RS09255 0.83 +3.1 1,853,515 + -1.7 1,853,515 + +1.7 1,853,679 + A4249_RS09260 0.35 +0.1 1,853,680 - A4249_RS09260 0.36 -0.2 1,853,680 - A4249_RS09260 0.36 +1.6 1,853,680 - A4249_RS09260 0.36 +0.3 1,853,752 + A4249_RS09260 0.52 +0.4 1,853,752 + A4249_RS09260 0.52 +1.5 1,853,753 - A4249_RS09260 0.53 +0.2 1,853,753 - A4249_RS09260 0.53 +0.8 1,853,753 - A4249_RS09260 0.53 -1.0 1,853,753 - A4249_RS09260 0.53 -0.1 1,853,753 - A4249_RS09260 0.53 +0.2 1,853,753 - A4249_RS09260 0.53 +0.3 1,853,753 - A4249_RS09260 0.53 -0.3 1,853,754 + A4249_RS09260 0.53 -0.2 1,853,754 + A4249_RS09260 0.53 +0.6 1,853,754 + A4249_RS09260 0.53 -0.7 1,853,754 + A4249_RS09260 0.53 -0.5 1,853,754 + A4249_RS09260 0.53 -1.0 1,853,754 + A4249_RS09260 0.53 -0.4 1,853,754 + A4249_RS09260 0.53 -0.4 1,853,754 + A4249_RS09260 0.53 -0.1 1,853,754 + A4249_RS09260 0.53 +0.5 1,853,755 - A4249_RS09260 0.53 -0.5 1,853,755 - A4249_RS09260 0.53 -0.0 1,853,755 - A4249_RS09260 0.53 -0.2 1,853,755 - A4249_RS09260 0.53 +1.0 1,853,755 - A4249_RS09260 0.53 +0.2 1,853,755 - A4249_RS09260 0.53 -0.1 1,853,755 - A4249_RS09260 0.53 -0.5 1,853,755 - A4249_RS09260 0.53 +0.5 1,853,755 - A4249_RS09260 0.53 -0.6 1,853,755 - A4249_RS09260 0.53 -0.7 1,853,755 - A4249_RS09260 0.53 +0.2 1,853,755 - A4249_RS09260 0.53 +0.5 1,853,755 - A4249_RS09260 0.53 -0.3 1,853,755 - A4249_RS09260 0.53 +1.1 1,853,957 + +0.4 1,853,958 - +0.4 1,853,975 + +1.3 1,853,975 + +0.1 1,853,975 + -0.0 1,853,975 + +0.4 1,853,975 + -1.7 1,853,975 + +0.3 1,853,975 + -0.8 1,853,976 - -0.5 1,853,976 - +0.5 1,853,996 + A4249_RS16800 0.14 -0.1 1,853,996 + A4249_RS16800 0.14 +0.6 1,853,996 + A4249_RS16800 0.14 +0.9 1,853,997 - A4249_RS16800 0.14 +1.1 1,853,997 - A4249_RS16800 0.14 -0.8 1,853,997 - A4249_RS16800 0.14 +1.2 1,853,997 - A4249_RS16800 0.14 +1.3 1,854,188 + +0.4 1,854,188 + -0.5 1,854,188 + -0.0 1,854,188 + +0.6 1,854,189 - -1.6 1,854,189 - -2.2 1,854,189 - -0.9 1,854,189 - -0.4 1,854,215 + +0.8 1,854,215 + +1.4 1,854,215 + +0.1 1,854,215 + -2.0 1,854,215 + -0.0 1,854,215 + -0.4 1,854,216 - -1.3 1,854,216 - +1.5 1,854,216 - +1.1 1,854,219 + -1.1 1,854,220 - +1.0 1,854,220 - +1.3 1,854,220 - +0.9 1,854,220 - -1.0 1,854,383 + A4249_RS09265 0.11 +0.5 1,854,383 + A4249_RS09265 0.11 +1.3 1,854,383 + A4249_RS09265 0.11 +0.5 1,854,384 - A4249_RS09265 0.12 +0.5 1,854,384 - A4249_RS09265 0.12 +2.5
Or see this region's nucleotide sequence