Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09210

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09200 and A4249_RS09205 are separated by 95 nucleotidesA4249_RS09205 and A4249_RS09210 are separated by 77 nucleotidesA4249_RS09210 and A4249_RS09215 are separated by 6 nucleotidesA4249_RS09215 and A4249_RS09220 are separated by 88 nucleotides A4249_RS09200: A4249_RS09200 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,842,501 to 1,843,298 _RS09200 A4249_RS09205: A4249_RS09205 - DUF4170 domain-containing protein, at 1,843,394 to 1,843,639 _RS09205 A4249_RS09210: A4249_RS09210 - hypothetical protein, at 1,843,717 to 1,843,929 _RS09210 A4249_RS09215: A4249_RS09215 - tyrosine-protein phosphatase, at 1,843,936 to 1,844,601 _RS09215 A4249_RS09220: A4249_RS09220 - hypothetical protein, at 1,844,690 to 1,845,211 _RS09220 Position (kb) 1843 1844Strain fitness (log2 ratio) -2 -1 0 1 2at 1842.717 kb on - strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.780 kb on + strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.781 kb on - strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.782 kb on + strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.783 kb on - strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.853 kb on + strand, within A4249_RS09200at 1842.854 kb on - strand, within A4249_RS09200at 1842.854 kb on - strand, within A4249_RS09200at 1842.854 kb on - strand, within A4249_RS09200at 1842.854 kb on - strand, within A4249_RS09200at 1842.854 kb on - strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.879 kb on + strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.880 kb on - strand, within A4249_RS09200at 1842.911 kb on + strand, within A4249_RS09200at 1842.912 kb on - strand, within A4249_RS09200at 1842.912 kb on - strand, within A4249_RS09200at 1842.944 kb on + strand, within A4249_RS09200at 1842.997 kb on - strand, within A4249_RS09200at 1842.997 kb on - strand, within A4249_RS09200at 1843.274 kb on + strandat 1843.275 kb on - strandat 1843.296 kb on + strandat 1843.296 kb on + strandat 1843.351 kb on - strandat 1843.702 kb on + strandat 1843.702 kb on + strandat 1843.703 kb on - strandat 1843.703 kb on - strandat 1843.703 kb on - strandat 1843.800 kb on + strand, within A4249_RS09210at 1843.807 kb on + strand, within A4249_RS09210at 1844.003 kb on - strand, within A4249_RS09215at 1844.018 kb on + strand, within A4249_RS09215at 1844.019 kb on - strand, within A4249_RS09215at 1844.078 kb on + strand, within A4249_RS09215at 1844.078 kb on + strand, within A4249_RS09215at 1844.078 kb on + strand, within A4249_RS09215at 1844.078 kb on + strand, within A4249_RS09215at 1844.078 kb on + strand, within A4249_RS09215at 1844.079 kb on - strand, within A4249_RS09215at 1844.079 kb on - strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.091 kb on + strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.092 kb on - strand, within A4249_RS09215at 1844.093 kb on + strand, within A4249_RS09215at 1844.093 kb on + strand, within A4249_RS09215at 1844.093 kb on + strand, within A4249_RS09215at 1844.094 kb on - strand, within A4249_RS09215at 1844.094 kb on - strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.132 kb on + strand, within A4249_RS09215at 1844.133 kb on - strand, within A4249_RS09215at 1844.133 kb on - strand, within A4249_RS09215at 1844.133 kb on - strand, within A4249_RS09215at 1844.190 kb on + strand, within A4249_RS09215at 1844.190 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.192 kb on + strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.193 kb on - strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.378 kb on + strand, within A4249_RS09215at 1844.379 kb on - strand, within A4249_RS09215at 1844.379 kb on - strand, within A4249_RS09215at 1844.379 kb on - strand, within A4249_RS09215at 1844.379 kb on - strand, within A4249_RS09215at 1844.381 kb on + strand, within A4249_RS09215at 1844.381 kb on + strand, within A4249_RS09215at 1844.381 kb on + strand, within A4249_RS09215at 1844.382 kb on - strand, within A4249_RS09215at 1844.382 kb on - strand, within A4249_RS09215at 1844.382 kb on - strand, within A4249_RS09215at 1844.382 kb on - strand, within A4249_RS09215at 1844.441 kb on + strand, within A4249_RS09215at 1844.441 kb on + strand, within A4249_RS09215at 1844.442 kb on - strand, within A4249_RS09215at 1844.442 kb on - strand, within A4249_RS09215at 1844.442 kb on - strand, within A4249_RS09215at 1844.442 kb on - strand, within A4249_RS09215at 1844.546 kb on + strandat 1844.546 kb on + strandat 1844.547 kb on - strandat 1844.547 kb on - strandat 1844.547 kb on - strandat 1844.613 kb on - strandat 1844.613 kb on - strandat 1844.789 kb on + strand, within A4249_RS09220at 1844.831 kb on + strand, within A4249_RS09220at 1844.832 kb on - strand, within A4249_RS09220at 1844.833 kb on + strand, within A4249_RS09220at 1844.833 kb on + strand, within A4249_RS09220at 1844.833 kb on + strand, within A4249_RS09220at 1844.833 kb on + strand, within A4249_RS09220at 1844.833 kb on + strand, within A4249_RS09220at 1844.834 kb on - strand, within A4249_RS09220at 1844.834 kb on - strand, within A4249_RS09220at 1844.834 kb on - strand, within A4249_RS09220at 1844.834 kb on - strand, within A4249_RS09220at 1844.834 kb on - strand, within A4249_RS09220at 1844.873 kb on + strand, within A4249_RS09220at 1844.873 kb on + strand, within A4249_RS09220at 1844.873 kb on + strand, within A4249_RS09220at 1844.873 kb on + strand, within A4249_RS09220at 1844.874 kb on - strand, within A4249_RS09220at 1844.874 kb on - strand, within A4249_RS09220

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,842,717 - A4249_RS09200 0.27 +1.0
1,842,780 + A4249_RS09200 0.35 +1.8
1,842,780 + A4249_RS09200 0.35 +0.4
1,842,780 + A4249_RS09200 0.35 +0.5
1,842,780 + A4249_RS09200 0.35 -1.0
1,842,780 + A4249_RS09200 0.35 +1.1
1,842,780 + A4249_RS09200 0.35 -0.5
1,842,780 + A4249_RS09200 0.35 -0.4
1,842,780 + A4249_RS09200 0.35 +0.3
1,842,780 + A4249_RS09200 0.35 +0.9
1,842,780 + A4249_RS09200 0.35 -1.0
1,842,780 + A4249_RS09200 0.35 +0.1
1,842,781 - A4249_RS09200 0.35 +0.4
1,842,781 - A4249_RS09200 0.35 +1.9
1,842,781 - A4249_RS09200 0.35 -0.1
1,842,781 - A4249_RS09200 0.35 +0.4
1,842,781 - A4249_RS09200 0.35 +0.3
1,842,781 - A4249_RS09200 0.35 -1.6
1,842,781 - A4249_RS09200 0.35 -1.2
1,842,781 - A4249_RS09200 0.35 +0.6
1,842,782 + A4249_RS09200 0.35 +0.8
1,842,782 + A4249_RS09200 0.35 +0.1
1,842,782 + A4249_RS09200 0.35 +0.1
1,842,782 + A4249_RS09200 0.35 +1.1
1,842,782 + A4249_RS09200 0.35 -1.7
1,842,782 + A4249_RS09200 0.35 +0.3
1,842,783 - A4249_RS09200 0.35 +1.7
1,842,783 - A4249_RS09200 0.35 -0.8
1,842,783 - A4249_RS09200 0.35 -0.4
1,842,783 - A4249_RS09200 0.35 -0.2
1,842,783 - A4249_RS09200 0.35 +0.9
1,842,783 - A4249_RS09200 0.35 -0.3
1,842,783 - A4249_RS09200 0.35 -0.3
1,842,783 - A4249_RS09200 0.35 +0.4
1,842,783 - A4249_RS09200 0.35 -1.3
1,842,783 - A4249_RS09200 0.35 +0.1
1,842,853 + A4249_RS09200 0.44 -1.7
1,842,853 + A4249_RS09200 0.44 +1.2
1,842,853 + A4249_RS09200 0.44 +1.4
1,842,853 + A4249_RS09200 0.44 +0.4
1,842,853 + A4249_RS09200 0.44 -0.1
1,842,853 + A4249_RS09200 0.44 -1.2
1,842,853 + A4249_RS09200 0.44 -0.1
1,842,853 + A4249_RS09200 0.44 -0.0
1,842,853 + A4249_RS09200 0.44 +0.4
1,842,853 + A4249_RS09200 0.44 +0.8
1,842,853 + A4249_RS09200 0.44 +0.1
1,842,854 - A4249_RS09200 0.44 -0.4
1,842,854 - A4249_RS09200 0.44 -0.7
1,842,854 - A4249_RS09200 0.44 -0.9
1,842,854 - A4249_RS09200 0.44 +0.9
1,842,854 - A4249_RS09200 0.44 -0.6
1,842,879 + A4249_RS09200 0.47 +0.4
1,842,879 + A4249_RS09200 0.47 +0.3
1,842,879 + A4249_RS09200 0.47 -0.4
1,842,879 + A4249_RS09200 0.47 +1.3
1,842,879 + A4249_RS09200 0.47 -0.9
1,842,879 + A4249_RS09200 0.47 +0.1
1,842,880 - A4249_RS09200 0.47 -0.3
1,842,880 - A4249_RS09200 0.47 -0.0
1,842,880 - A4249_RS09200 0.47 -2.2
1,842,880 - A4249_RS09200 0.47 +0.4
1,842,880 - A4249_RS09200 0.47 +0.6
1,842,880 - A4249_RS09200 0.47 -1.4
1,842,911 + A4249_RS09200 0.51 -0.3
1,842,912 - A4249_RS09200 0.52 -1.0
1,842,912 - A4249_RS09200 0.52 -0.5
1,842,944 + A4249_RS09200 0.56 +0.1
1,842,997 - A4249_RS09200 0.62 +1.3
1,842,997 - A4249_RS09200 0.62 -0.5
1,843,274 + -0.8
1,843,275 - +0.3
1,843,296 + -0.8
1,843,296 + -0.4
1,843,351 - +1.2
1,843,702 + -0.1
1,843,702 + -1.6
1,843,703 - -1.8
1,843,703 - +0.3
1,843,703 - -1.1
1,843,800 + A4249_RS09210 0.39 -1.3
1,843,807 + A4249_RS09210 0.42 -1.8
1,844,003 - A4249_RS09215 0.10 -0.2
1,844,018 + A4249_RS09215 0.12 -0.1
1,844,019 - A4249_RS09215 0.12 -0.3
1,844,078 + A4249_RS09215 0.21 -0.5
1,844,078 + A4249_RS09215 0.21 -0.5
1,844,078 + A4249_RS09215 0.21 -0.2
1,844,078 + A4249_RS09215 0.21 -0.3
1,844,078 + A4249_RS09215 0.21 -0.2
1,844,079 - A4249_RS09215 0.21 -0.1
1,844,079 - A4249_RS09215 0.21 +0.1
1,844,091 + A4249_RS09215 0.23 -0.5
1,844,091 + A4249_RS09215 0.23 -0.4
1,844,091 + A4249_RS09215 0.23 -0.5
1,844,091 + A4249_RS09215 0.23 -0.3
1,844,091 + A4249_RS09215 0.23 -0.3
1,844,091 + A4249_RS09215 0.23 -0.4
1,844,091 + A4249_RS09215 0.23 -0.3
1,844,091 + A4249_RS09215 0.23 -0.2
1,844,091 + A4249_RS09215 0.23 -0.2
1,844,091 + A4249_RS09215 0.23 -0.1
1,844,092 - A4249_RS09215 0.23 -0.5
1,844,092 - A4249_RS09215 0.23 -0.2
1,844,092 - A4249_RS09215 0.23 -0.4
1,844,092 - A4249_RS09215 0.23 -0.8
1,844,092 - A4249_RS09215 0.23 -0.3
1,844,092 - A4249_RS09215 0.23 -0.4
1,844,093 + A4249_RS09215 0.24 -0.2
1,844,093 + A4249_RS09215 0.24 -0.5
1,844,093 + A4249_RS09215 0.24 -0.4
1,844,094 - A4249_RS09215 0.24 -0.3
1,844,094 - A4249_RS09215 0.24 -0.3
1,844,132 + A4249_RS09215 0.29 -0.3
1,844,132 + A4249_RS09215 0.29 -0.2
1,844,132 + A4249_RS09215 0.29 -0.4
1,844,132 + A4249_RS09215 0.29 -0.4
1,844,132 + A4249_RS09215 0.29 -0.0
1,844,132 + A4249_RS09215 0.29 -0.3
1,844,132 + A4249_RS09215 0.29 -0.3
1,844,132 + A4249_RS09215 0.29 +0.0
1,844,133 - A4249_RS09215 0.30 -0.3
1,844,133 - A4249_RS09215 0.30 -0.2
1,844,133 - A4249_RS09215 0.30 -0.3
1,844,190 + A4249_RS09215 0.38 -0.3
1,844,190 + A4249_RS09215 0.38 -0.4
1,844,192 + A4249_RS09215 0.38 -0.2
1,844,192 + A4249_RS09215 0.38 -0.2
1,844,192 + A4249_RS09215 0.38 -0.1
1,844,192 + A4249_RS09215 0.38 -0.5
1,844,192 + A4249_RS09215 0.38 -0.4
1,844,192 + A4249_RS09215 0.38 -0.2
1,844,193 - A4249_RS09215 0.39 -0.3
1,844,193 - A4249_RS09215 0.39 -0.3
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.3
1,844,193 - A4249_RS09215 0.39 -0.4
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.5
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.2
1,844,193 - A4249_RS09215 0.39 -0.3
1,844,378 + A4249_RS09215 0.66 -0.4
1,844,378 + A4249_RS09215 0.66 -0.3
1,844,378 + A4249_RS09215 0.66 -0.3
1,844,378 + A4249_RS09215 0.66 -0.4
1,844,378 + A4249_RS09215 0.66 -0.4
1,844,378 + A4249_RS09215 0.66 -0.4
1,844,378 + A4249_RS09215 0.66 -0.6
1,844,378 + A4249_RS09215 0.66 -0.3
1,844,378 + A4249_RS09215 0.66 -0.7
1,844,379 - A4249_RS09215 0.67 -0.2
1,844,379 - A4249_RS09215 0.67 -0.5
1,844,379 - A4249_RS09215 0.67 -0.5
1,844,379 - A4249_RS09215 0.67 -0.1
1,844,381 + A4249_RS09215 0.67 -0.3
1,844,381 + A4249_RS09215 0.67 -0.3
1,844,381 + A4249_RS09215 0.67 -0.3
1,844,382 - A4249_RS09215 0.67 -0.3
1,844,382 - A4249_RS09215 0.67 -0.4
1,844,382 - A4249_RS09215 0.67 +0.0
1,844,382 - A4249_RS09215 0.67 -0.3
1,844,441 + A4249_RS09215 0.76 -0.7
1,844,441 + A4249_RS09215 0.76 -0.4
1,844,442 - A4249_RS09215 0.76 +0.0
1,844,442 - A4249_RS09215 0.76 -0.4
1,844,442 - A4249_RS09215 0.76 -0.4
1,844,442 - A4249_RS09215 0.76 -0.2
1,844,546 + -0.3
1,844,546 + -0.4
1,844,547 - -0.2
1,844,547 - -0.4
1,844,547 - -0.6
1,844,613 - -0.8
1,844,613 - -0.5
1,844,789 + A4249_RS09220 0.19 -1.0
1,844,831 + A4249_RS09220 0.27 -1.2
1,844,832 - A4249_RS09220 0.27 +0.6
1,844,833 + A4249_RS09220 0.27 -0.5
1,844,833 + A4249_RS09220 0.27 -0.5
1,844,833 + A4249_RS09220 0.27 +0.5
1,844,833 + A4249_RS09220 0.27 -0.2
1,844,833 + A4249_RS09220 0.27 -1.8
1,844,834 - A4249_RS09220 0.28 -1.4
1,844,834 - A4249_RS09220 0.28 +0.6
1,844,834 - A4249_RS09220 0.28 -1.4
1,844,834 - A4249_RS09220 0.28 -0.3
1,844,834 - A4249_RS09220 0.28 +1.6
1,844,873 + A4249_RS09220 0.35 +0.0
1,844,873 + A4249_RS09220 0.35 -0.1
1,844,873 + A4249_RS09220 0.35 -0.8
1,844,873 + A4249_RS09220 0.35 -0.0
1,844,874 - A4249_RS09220 0.35 +0.1
1,844,874 - A4249_RS09220 0.35 -0.4

Or see this region's nucleotide sequence