Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09075

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09070 and A4249_RS09075 are separated by 13 nucleotidesA4249_RS09075 and A4249_RS09080 overlap by 4 nucleotidesA4249_RS09080 and A4249_RS09085 overlap by 4 nucleotidesA4249_RS09085 and A4249_RS09090 are separated by 1 nucleotidesA4249_RS09090 and A4249_RS09095 overlap by 4 nucleotides A4249_RS09070: A4249_RS09070 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 1,817,269 to 1,818,693 _RS09070 A4249_RS09075: A4249_RS09075 - hypothetical protein, at 1,818,707 to 1,818,973 _RS09075 A4249_RS09080: A4249_RS09080 - hypothetical protein, at 1,818,970 to 1,819,278 _RS09080 A4249_RS09085: A4249_RS09085 - NAD(P) transhydrogenase subunit alpha, at 1,819,275 to 1,819,613 _RS09085 A4249_RS09090: A4249_RS09090 - hypothetical protein, at 1,819,615 to 1,819,848 _RS09090 A4249_RS09095: A4249_RS09095 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 1,819,845 to 1,820,978 _RS09095 Position (kb) 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1817.714 kb on + strand, within A4249_RS09070at 1817.785 kb on - strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.897 kb on + strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.898 kb on - strand, within A4249_RS09070at 1817.953 kb on - strand, within A4249_RS09070at 1817.996 kb on + strand, within A4249_RS09070at 1817.996 kb on + strand, within A4249_RS09070at 1817.997 kb on - strand, within A4249_RS09070at 1817.997 kb on - strand, within A4249_RS09070at 1817.997 kb on - strand, within A4249_RS09070at 1817.997 kb on - strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.356 kb on + strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.357 kb on - strand, within A4249_RS09070at 1818.644 kb on - strandat 1818.665 kb on + strandat 1818.665 kb on + strandat 1818.665 kb on + strandat 1818.665 kb on + strandat 1818.666 kb on - strandat 1818.666 kb on - strandat 1818.666 kb on - strandat 1818.666 kb on - strandat 1818.900 kb on + strand, within A4249_RS09075at 1818.901 kb on - strand, within A4249_RS09075at 1818.901 kb on - strand, within A4249_RS09075at 1818.901 kb on - strand, within A4249_RS09075at 1819.020 kb on - strand, within A4249_RS09080at 1819.020 kb on - strand, within A4249_RS09080at 1819.020 kb on - strand, within A4249_RS09080at 1819.030 kb on + strand, within A4249_RS09080at 1819.030 kb on + strand, within A4249_RS09080at 1819.031 kb on - strand, within A4249_RS09080at 1819.031 kb on - strand, within A4249_RS09080at 1819.039 kb on + strand, within A4249_RS09080at 1819.039 kb on + strand, within A4249_RS09080at 1819.039 kb on + strand, within A4249_RS09080at 1819.070 kb on + strand, within A4249_RS09080at 1819.070 kb on + strand, within A4249_RS09080at 1819.071 kb on - strand, within A4249_RS09080at 1819.071 kb on - strand, within A4249_RS09080at 1819.208 kb on - strand, within A4249_RS09080at 1819.219 kb on + strand, within A4249_RS09080at 1819.219 kb on + strand, within A4249_RS09080at 1819.219 kb on + strand, within A4249_RS09080at 1819.219 kb on + strand, within A4249_RS09080at 1819.220 kb on - strand, within A4249_RS09080at 1819.220 kb on - strand, within A4249_RS09080at 1819.220 kb on - strand, within A4249_RS09080at 1819.220 kb on - strand, within A4249_RS09080at 1819.220 kb on - strand, within A4249_RS09080at 1819.225 kb on + strand, within A4249_RS09080at 1819.225 kb on + strand, within A4249_RS09080at 1819.225 kb on + strand, within A4249_RS09080at 1819.225 kb on + strand, within A4249_RS09080at 1819.225 kb on + strand, within A4249_RS09080at 1819.226 kb on - strand, within A4249_RS09080at 1819.226 kb on - strand, within A4249_RS09080at 1819.226 kb on - strand, within A4249_RS09080at 1819.226 kb on - strand, within A4249_RS09080at 1819.318 kb on + strand, within A4249_RS09085at 1819.318 kb on + strand, within A4249_RS09085at 1819.318 kb on + strand, within A4249_RS09085at 1819.318 kb on + strand, within A4249_RS09085at 1819.318 kb on + strand, within A4249_RS09085at 1819.319 kb on - strand, within A4249_RS09085at 1819.319 kb on - strand, within A4249_RS09085at 1819.319 kb on - strand, within A4249_RS09085at 1819.319 kb on - strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.331 kb on + strand, within A4249_RS09085at 1819.332 kb on - strand, within A4249_RS09085at 1819.332 kb on - strand, within A4249_RS09085at 1819.332 kb on - strand, within A4249_RS09085at 1819.514 kb on + strand, within A4249_RS09085at 1819.514 kb on + strand, within A4249_RS09085at 1819.514 kb on + strand, within A4249_RS09085at 1819.515 kb on - strand, within A4249_RS09085at 1819.515 kb on - strand, within A4249_RS09085at 1819.515 kb on - strand, within A4249_RS09085at 1819.515 kb on - strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.546 kb on + strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.547 kb on - strand, within A4249_RS09085at 1819.549 kb on + strand, within A4249_RS09085at 1819.550 kb on - strand, within A4249_RS09085at 1819.550 kb on - strand, within A4249_RS09085at 1819.550 kb on - strand, within A4249_RS09085at 1819.711 kb on - strand, within A4249_RS09090at 1819.827 kb on + strandat 1819.827 kb on + strandat 1819.828 kb on - strandat 1819.828 kb on - strandat 1819.828 kb on - strandat 1819.828 kb on - strandat 1819.828 kb on - strandat 1819.890 kb on + strandat 1819.890 kb on + strandat 1819.951 kb on - strandat 1819.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,817,714 + A4249_RS09070 0.31 +1.3
1,817,785 - A4249_RS09070 0.36 +0.6
1,817,897 + A4249_RS09070 0.44 -0.5
1,817,897 + A4249_RS09070 0.44 +1.3
1,817,897 + A4249_RS09070 0.44 -0.5
1,817,897 + A4249_RS09070 0.44 -0.6
1,817,897 + A4249_RS09070 0.44 -0.0
1,817,897 + A4249_RS09070 0.44 -0.8
1,817,897 + A4249_RS09070 0.44 +2.1
1,817,897 + A4249_RS09070 0.44 -0.9
1,817,897 + A4249_RS09070 0.44 -1.2
1,817,897 + A4249_RS09070 0.44 -0.7
1,817,898 - A4249_RS09070 0.44 -0.5
1,817,898 - A4249_RS09070 0.44 -0.7
1,817,898 - A4249_RS09070 0.44 -0.6
1,817,898 - A4249_RS09070 0.44 -2.1
1,817,898 - A4249_RS09070 0.44 -1.4
1,817,898 - A4249_RS09070 0.44 -0.5
1,817,898 - A4249_RS09070 0.44 +0.9
1,817,898 - A4249_RS09070 0.44 -1.0
1,817,898 - A4249_RS09070 0.44 -0.8
1,817,898 - A4249_RS09070 0.44 -0.4
1,817,898 - A4249_RS09070 0.44 +0.6
1,817,898 - A4249_RS09070 0.44 -0.2
1,817,898 - A4249_RS09070 0.44 -0.4
1,817,898 - A4249_RS09070 0.44 +0.2
1,817,898 - A4249_RS09070 0.44 +0.7
1,817,953 - A4249_RS09070 0.48 -0.6
1,817,996 + A4249_RS09070 0.51 -0.1
1,817,996 + A4249_RS09070 0.51 -0.1
1,817,997 - A4249_RS09070 0.51 -0.1
1,817,997 - A4249_RS09070 0.51 +1.3
1,817,997 - A4249_RS09070 0.51 +0.5
1,817,997 - A4249_RS09070 0.51 +0.6
1,818,356 + A4249_RS09070 0.76 +0.2
1,818,356 + A4249_RS09070 0.76 +1.1
1,818,356 + A4249_RS09070 0.76 +0.2
1,818,356 + A4249_RS09070 0.76 +0.6
1,818,356 + A4249_RS09070 0.76 +0.2
1,818,356 + A4249_RS09070 0.76 +0.1
1,818,356 + A4249_RS09070 0.76 -1.0
1,818,356 + A4249_RS09070 0.76 -0.2
1,818,356 + A4249_RS09070 0.76 +0.1
1,818,356 + A4249_RS09070 0.76 -0.6
1,818,357 - A4249_RS09070 0.76 +0.1
1,818,357 - A4249_RS09070 0.76 -0.7
1,818,357 - A4249_RS09070 0.76 -1.7
1,818,357 - A4249_RS09070 0.76 +0.0
1,818,357 - A4249_RS09070 0.76 -0.8
1,818,357 - A4249_RS09070 0.76 -0.6
1,818,357 - A4249_RS09070 0.76 +0.4
1,818,357 - A4249_RS09070 0.76 -0.3
1,818,357 - A4249_RS09070 0.76 -0.4
1,818,357 - A4249_RS09070 0.76 -0.1
1,818,357 - A4249_RS09070 0.76 +0.7
1,818,357 - A4249_RS09070 0.76 +0.0
1,818,357 - A4249_RS09070 0.76 +0.5
1,818,644 - -0.1
1,818,665 + -0.4
1,818,665 + -0.8
1,818,665 + +0.6
1,818,665 + -0.8
1,818,666 - -0.2
1,818,666 - +0.2
1,818,666 - -0.9
1,818,666 - -1.3
1,818,900 + A4249_RS09075 0.72 +1.2
1,818,901 - A4249_RS09075 0.73 -0.5
1,818,901 - A4249_RS09075 0.73 +0.6
1,818,901 - A4249_RS09075 0.73 +1.4
1,819,020 - A4249_RS09080 0.16 -1.2
1,819,020 - A4249_RS09080 0.16 +0.5
1,819,020 - A4249_RS09080 0.16 +0.1
1,819,030 + A4249_RS09080 0.19 -1.1
1,819,030 + A4249_RS09080 0.19 +0.0
1,819,031 - A4249_RS09080 0.20 -1.1
1,819,031 - A4249_RS09080 0.20 -0.9
1,819,039 + A4249_RS09080 0.22 +0.4
1,819,039 + A4249_RS09080 0.22 +0.4
1,819,039 + A4249_RS09080 0.22 +0.8
1,819,070 + A4249_RS09080 0.32 +1.5
1,819,070 + A4249_RS09080 0.32 -1.3
1,819,071 - A4249_RS09080 0.33 +0.7
1,819,071 - A4249_RS09080 0.33 +0.3
1,819,208 - A4249_RS09080 0.77 -0.8
1,819,219 + A4249_RS09080 0.81 -0.2
1,819,219 + A4249_RS09080 0.81 -0.8
1,819,219 + A4249_RS09080 0.81 -1.1
1,819,219 + A4249_RS09080 0.81 -0.2
1,819,220 - A4249_RS09080 0.81 -0.2
1,819,220 - A4249_RS09080 0.81 +0.1
1,819,220 - A4249_RS09080 0.81 -0.4
1,819,220 - A4249_RS09080 0.81 -0.7
1,819,220 - A4249_RS09080 0.81 -0.1
1,819,225 + A4249_RS09080 0.83 +0.2
1,819,225 + A4249_RS09080 0.83 -0.5
1,819,225 + A4249_RS09080 0.83 -0.0
1,819,225 + A4249_RS09080 0.83 +1.1
1,819,225 + A4249_RS09080 0.83 -0.3
1,819,226 - A4249_RS09080 0.83 +0.8
1,819,226 - A4249_RS09080 0.83 +0.1
1,819,226 - A4249_RS09080 0.83 +0.3
1,819,226 - A4249_RS09080 0.83 -0.7
1,819,318 + A4249_RS09085 0.13 +0.3
1,819,318 + A4249_RS09085 0.13 +0.1
1,819,318 + A4249_RS09085 0.13 -0.9
1,819,318 + A4249_RS09085 0.13 +0.2
1,819,318 + A4249_RS09085 0.13 -0.3
1,819,319 - A4249_RS09085 0.13 -2.8
1,819,319 - A4249_RS09085 0.13 +0.2
1,819,319 - A4249_RS09085 0.13 +0.2
1,819,319 - A4249_RS09085 0.13 +0.1
1,819,331 + A4249_RS09085 0.17 -0.4
1,819,331 + A4249_RS09085 0.17 -0.9
1,819,331 + A4249_RS09085 0.17 +0.2
1,819,331 + A4249_RS09085 0.17 -0.2
1,819,331 + A4249_RS09085 0.17 +0.0
1,819,331 + A4249_RS09085 0.17 -0.9
1,819,331 + A4249_RS09085 0.17 +0.3
1,819,331 + A4249_RS09085 0.17 -1.6
1,819,332 - A4249_RS09085 0.17 -0.2
1,819,332 - A4249_RS09085 0.17 -0.3
1,819,332 - A4249_RS09085 0.17 -0.8
1,819,514 + A4249_RS09085 0.71 -0.1
1,819,514 + A4249_RS09085 0.71 +0.3
1,819,514 + A4249_RS09085 0.71 +0.2
1,819,515 - A4249_RS09085 0.71 +0.9
1,819,515 - A4249_RS09085 0.71 -1.4
1,819,515 - A4249_RS09085 0.71 +0.5
1,819,515 - A4249_RS09085 0.71 -0.3
1,819,546 + A4249_RS09085 0.80 -0.2
1,819,546 + A4249_RS09085 0.80 -1.3
1,819,546 + A4249_RS09085 0.80 -0.2
1,819,546 + A4249_RS09085 0.80 -0.8
1,819,546 + A4249_RS09085 0.80 -0.7
1,819,546 + A4249_RS09085 0.80 +0.2
1,819,546 + A4249_RS09085 0.80 +1.4
1,819,546 + A4249_RS09085 0.80 -1.5
1,819,546 + A4249_RS09085 0.80 -0.4
1,819,546 + A4249_RS09085 0.80 +0.3
1,819,547 - A4249_RS09085 0.80 -1.2
1,819,547 - A4249_RS09085 0.80 -0.3
1,819,547 - A4249_RS09085 0.80 -1.6
1,819,547 - A4249_RS09085 0.80 -0.4
1,819,547 - A4249_RS09085 0.80 +1.0
1,819,547 - A4249_RS09085 0.80 -0.9
1,819,547 - A4249_RS09085 0.80 -0.5
1,819,547 - A4249_RS09085 0.80 +0.5
1,819,547 - A4249_RS09085 0.80 -2.2
1,819,547 - A4249_RS09085 0.80 +0.6
1,819,547 - A4249_RS09085 0.80 -0.0
1,819,549 + A4249_RS09085 0.81 +0.6
1,819,550 - A4249_RS09085 0.81 -0.6
1,819,550 - A4249_RS09085 0.81 -0.5
1,819,550 - A4249_RS09085 0.81 +0.8
1,819,711 - A4249_RS09090 0.41 -0.6
1,819,827 + +0.1
1,819,827 + +0.7
1,819,828 - +0.2
1,819,828 - -0.4
1,819,828 - -0.4
1,819,828 - -0.6
1,819,828 - +0.3
1,819,890 + -0.4
1,819,890 + +0.8
1,819,951 - -1.3
1,819,951 - +1.0

Or see this region's nucleotide sequence