Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08730

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08720 and A4249_RS08725 are separated by 176 nucleotidesA4249_RS08725 and A4249_RS08730 are separated by 91 nucleotidesA4249_RS08730 and A4249_RS08735 are separated by 42 nucleotidesA4249_RS08735 and A4249_RS08740 are separated by 61 nucleotides A4249_RS08720: A4249_RS08720 - PaaI family thioesterase, at 1,751,675 to 1,752,070 _RS08720 A4249_RS08725: A4249_RS08725 - hypothetical protein, at 1,752,247 to 1,752,588 _RS08725 A4249_RS08730: A4249_RS08730 - hypothetical protein, at 1,752,680 to 1,753,120 _RS08730 A4249_RS08735: A4249_RS08735 - helix-turn-helix transcriptional regulator, at 1,753,163 to 1,753,798 _RS08735 A4249_RS08740: A4249_RS08740 - SH3 domain-containing protein, at 1,753,860 to 1,754,333 _RS08740 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2at 1751.703 kb on - strandat 1751.912 kb on + strand, within A4249_RS08720at 1751.913 kb on - strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.037 kb on + strandat 1752.206 kb on + strandat 1752.223 kb on + strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.511 kb on + strand, within A4249_RS08725at 1752.511 kb on + strand, within A4249_RS08725at 1752.511 kb on + strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.598 kb on - strandat 1752.629 kb on + strandat 1752.630 kb on - strandat 1752.630 kb on - strandat 1752.689 kb on - strandat 1752.689 kb on - strandat 1752.703 kb on + strandat 1752.704 kb on - strandat 1752.735 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.772 kb on - strand, within A4249_RS08730at 1752.785 kb on + strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.979 kb on + strand, within A4249_RS08730at 1752.979 kb on + strand, within A4249_RS08730at 1752.980 kb on - strand, within A4249_RS08730at 1752.980 kb on - strand, within A4249_RS08730at 1753.010 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.034 kb on + strand, within A4249_RS08730at 1753.034 kb on + strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.039 kb on + strand, within A4249_RS08730at 1753.039 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.060 kb on - strand, within A4249_RS08730at 1753.060 kb on - strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730at 1753.105 kb on - strandat 1753.109 kb on - strandat 1753.131 kb on + strandat 1753.131 kb on + strandat 1753.131 kb on + strandat 1753.131 kb on + strandat 1753.131 kb on + strandat 1753.132 kb on - strandat 1753.132 kb on - strandat 1753.132 kb on - strandat 1753.132 kb on - strandat 1753.132 kb on - strandat 1753.132 kb on - strandat 1753.796 kb on + strandat 1753.796 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.978 kb on + strand, within A4249_RS08740at 1753.978 kb on + strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1754.040 kb on - strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,751,703 - -1.1
1,751,912 + A4249_RS08720 0.60 -0.1
1,751,913 - A4249_RS08720 0.60 -0.8
1,752,025 + A4249_RS08720 0.88 -0.7
1,752,025 + A4249_RS08720 0.88 -0.6
1,752,025 + A4249_RS08720 0.88 +1.1
1,752,025 + A4249_RS08720 0.88 +0.5
1,752,025 + A4249_RS08720 0.88 +1.4
1,752,025 + A4249_RS08720 0.88 -1.1
1,752,025 + A4249_RS08720 0.88 +0.4
1,752,026 - A4249_RS08720 0.89 +1.5
1,752,026 - A4249_RS08720 0.89 -0.9
1,752,037 + +1.0
1,752,206 + -0.3
1,752,223 + -0.5
1,752,224 - -0.4
1,752,224 - +0.1
1,752,224 - -0.6
1,752,224 - -0.1
1,752,511 + A4249_RS08725 0.77 +0.8
1,752,511 + A4249_RS08725 0.77 -0.9
1,752,511 + A4249_RS08725 0.77 -0.8
1,752,512 - A4249_RS08725 0.77 -0.7
1,752,512 - A4249_RS08725 0.77 -0.5
1,752,512 - A4249_RS08725 0.77 -1.6
1,752,512 - A4249_RS08725 0.77 -0.1
1,752,512 - A4249_RS08725 0.77 -0.8
1,752,598 - -0.5
1,752,629 + +0.0
1,752,630 - -2.0
1,752,630 - -0.7
1,752,689 - -2.4
1,752,689 - -0.4
1,752,703 + -0.9
1,752,704 - +1.1
1,752,735 + A4249_RS08730 0.12 -1.3
1,752,771 + A4249_RS08730 0.21 +0.0
1,752,771 + A4249_RS08730 0.21 +0.2
1,752,771 + A4249_RS08730 0.21 -0.5
1,752,771 + A4249_RS08730 0.21 -0.3
1,752,772 - A4249_RS08730 0.21 +2.1
1,752,785 + A4249_RS08730 0.24 +0.0
1,752,786 - A4249_RS08730 0.24 -0.5
1,752,786 - A4249_RS08730 0.24 +1.0
1,752,786 - A4249_RS08730 0.24 +0.2
1,752,942 + A4249_RS08730 0.59 +1.5
1,752,942 + A4249_RS08730 0.59 +0.1
1,752,942 + A4249_RS08730 0.59 +1.5
1,752,942 + A4249_RS08730 0.59 +0.4
1,752,942 + A4249_RS08730 0.59 -0.1
1,752,967 + A4249_RS08730 0.65 -0.9
1,752,967 + A4249_RS08730 0.65 -0.1
1,752,967 + A4249_RS08730 0.65 -0.2
1,752,967 + A4249_RS08730 0.65 -0.6
1,752,967 + A4249_RS08730 0.65 -0.1
1,752,967 + A4249_RS08730 0.65 +0.4
1,752,968 - A4249_RS08730 0.65 -0.1
1,752,968 - A4249_RS08730 0.65 +1.3
1,752,968 - A4249_RS08730 0.65 +0.2
1,752,968 - A4249_RS08730 0.65 -0.6
1,752,968 - A4249_RS08730 0.65 -0.6
1,752,968 - A4249_RS08730 0.65 -0.6
1,752,979 + A4249_RS08730 0.68 -0.3
1,752,979 + A4249_RS08730 0.68 -0.3
1,752,980 - A4249_RS08730 0.68 +1.1
1,752,980 - A4249_RS08730 0.68 -0.1
1,753,010 + A4249_RS08730 0.75 +0.4
1,753,012 + A4249_RS08730 0.75 -0.0
1,753,012 + A4249_RS08730 0.75 +1.3
1,753,012 + A4249_RS08730 0.75 -0.1
1,753,012 + A4249_RS08730 0.75 -1.0
1,753,012 + A4249_RS08730 0.75 +1.1
1,753,012 + A4249_RS08730 0.75 -0.6
1,753,013 - A4249_RS08730 0.76 -0.1
1,753,013 - A4249_RS08730 0.76 -0.7
1,753,013 - A4249_RS08730 0.76 +0.1
1,753,013 - A4249_RS08730 0.76 -2.7
1,753,013 - A4249_RS08730 0.76 +0.3
1,753,034 + A4249_RS08730 0.80 +0.3
1,753,034 + A4249_RS08730 0.80 -0.5
1,753,035 - A4249_RS08730 0.80 -0.0
1,753,035 - A4249_RS08730 0.80 -1.1
1,753,035 - A4249_RS08730 0.80 -0.3
1,753,035 - A4249_RS08730 0.80 +1.2
1,753,035 - A4249_RS08730 0.80 -1.3
1,753,039 + A4249_RS08730 0.81 +0.1
1,753,039 + A4249_RS08730 0.81 +0.2
1,753,059 + A4249_RS08730 0.86 -0.1
1,753,059 + A4249_RS08730 0.86 -1.6
1,753,059 + A4249_RS08730 0.86 +0.6
1,753,059 + A4249_RS08730 0.86 +0.2
1,753,060 - A4249_RS08730 0.86 -0.6
1,753,060 - A4249_RS08730 0.86 -0.8
1,753,070 + A4249_RS08730 0.88 -1.0
1,753,070 + A4249_RS08730 0.88 +0.1
1,753,070 + A4249_RS08730 0.88 -0.2
1,753,105 - +1.1
1,753,109 - -0.2
1,753,131 + -0.2
1,753,131 + -0.6
1,753,131 + +0.5
1,753,131 + -0.1
1,753,131 + -0.1
1,753,132 - +0.5
1,753,132 - +0.5
1,753,132 - +1.3
1,753,132 - +0.5
1,753,132 - +0.2
1,753,132 - -1.2
1,753,796 + -0.8
1,753,796 + -0.6
1,753,876 + -0.4
1,753,876 + +0.4
1,753,876 + +0.7
1,753,876 + +0.3
1,753,876 + +0.2
1,753,877 - +0.1
1,753,877 - -0.5
1,753,877 - -0.5
1,753,877 - -0.0
1,753,877 - -0.4
1,753,978 + A4249_RS08740 0.25 -0.3
1,753,978 + A4249_RS08740 0.25 +0.5
1,753,979 - A4249_RS08740 0.25 -0.6
1,753,979 - A4249_RS08740 0.25 -0.3
1,753,979 - A4249_RS08740 0.25 +0.1
1,754,040 - A4249_RS08740 0.38 +0.1
1,754,083 + A4249_RS08740 0.47 +1.5
1,754,083 + A4249_RS08740 0.47 -0.9
1,754,083 + A4249_RS08740 0.47 -0.3
1,754,083 + A4249_RS08740 0.47 -0.6
1,754,084 - A4249_RS08740 0.47 +1.2
1,754,084 - A4249_RS08740 0.47 -0.5
1,754,084 - A4249_RS08740 0.47 -0.7
1,754,084 - A4249_RS08740 0.47 -0.1
1,754,084 - A4249_RS08740 0.47 +0.9
1,754,084 - A4249_RS08740 0.47 -0.3

Or see this region's nucleotide sequence