Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08710

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08705 and A4249_RS08710 are separated by 3 nucleotidesA4249_RS08710 and A4249_RS08715 are separated by 46 nucleotidesA4249_RS08715 and A4249_RS08720 overlap by 4 nucleotides A4249_RS08705: A4249_RS08705 - response regulator, at 1,748,474 to 1,750,096 _RS08705 A4249_RS08710: A4249_RS08710 - ligase-associated DNA damage response exonuclease, at 1,750,100 to 1,751,131 _RS08710 A4249_RS08715: A4249_RS08715 - PaaI family thioesterase, at 1,751,178 to 1,751,678 _RS08715 A4249_RS08720: A4249_RS08720 - PaaI family thioesterase, at 1,751,675 to 1,752,070 _RS08720 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1at 1749.328 kb on + strand, within A4249_RS08705at 1749.373 kb on + strand, within A4249_RS08705at 1749.713 kb on - strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.878 kb on - strand, within A4249_RS08705at 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.605 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.902 kb on + strand, within A4249_RS08710at 1750.903 kb on - strand, within A4249_RS08710at 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.085 kb on + strandat 1751.086 kb on - strandat 1751.086 kb on - strandat 1751.324 kb on + strand, within A4249_RS08715at 1751.325 kb on - strand, within A4249_RS08715at 1751.325 kb on - strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.703 kb on - strandat 1751.912 kb on + strand, within A4249_RS08720at 1751.913 kb on - strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,749,328 + A4249_RS08705 0.53 +1.4
1,749,373 + A4249_RS08705 0.55 -0.1
1,749,713 - A4249_RS08705 0.76 +0.6
1,749,877 + A4249_RS08705 0.86 -1.5
1,749,877 + A4249_RS08705 0.86 -0.9
1,749,877 + A4249_RS08705 0.86 -0.5
1,749,877 + A4249_RS08705 0.86 -0.6
1,749,878 - A4249_RS08705 0.87 -0.2
1,749,959 + -0.9
1,749,959 + -0.5
1,749,959 + -0.1
1,749,959 + +0.5
1,749,959 + +0.7
1,749,959 + -0.7
1,749,959 + -0.4
1,749,959 + +0.8
1,749,960 - -1.2
1,749,960 - -1.1
1,749,960 - -2.1
1,749,960 - -0.7
1,749,960 - -0.7
1,749,960 - +0.8
1,750,503 + A4249_RS08710 0.39 -0.0
1,750,503 + A4249_RS08710 0.39 -0.6
1,750,503 + A4249_RS08710 0.39 +1.2
1,750,503 + A4249_RS08710 0.39 -0.7
1,750,503 + A4249_RS08710 0.39 +0.1
1,750,504 - A4249_RS08710 0.39 -0.8
1,750,504 - A4249_RS08710 0.39 -1.1
1,750,504 - A4249_RS08710 0.39 -1.8
1,750,504 - A4249_RS08710 0.39 +0.1
1,750,504 - A4249_RS08710 0.39 -0.9
1,750,539 + A4249_RS08710 0.43 -0.1
1,750,539 + A4249_RS08710 0.43 +0.0
1,750,539 + A4249_RS08710 0.43 -0.4
1,750,539 + A4249_RS08710 0.43 +0.7
1,750,539 + A4249_RS08710 0.43 -2.3
1,750,539 + A4249_RS08710 0.43 -0.3
1,750,539 + A4249_RS08710 0.43 -0.3
1,750,539 + A4249_RS08710 0.43 +0.1
1,750,539 + A4249_RS08710 0.43 +0.1
1,750,539 + A4249_RS08710 0.43 -0.5
1,750,540 - A4249_RS08710 0.43 -1.3
1,750,540 - A4249_RS08710 0.43 +0.9
1,750,540 - A4249_RS08710 0.43 +1.5
1,750,540 - A4249_RS08710 0.43 +1.3
1,750,540 - A4249_RS08710 0.43 -0.2
1,750,540 - A4249_RS08710 0.43 +0.4
1,750,540 - A4249_RS08710 0.43 +0.1
1,750,540 - A4249_RS08710 0.43 -0.0
1,750,540 - A4249_RS08710 0.43 +0.5
1,750,540 - A4249_RS08710 0.43 -0.1
1,750,540 - A4249_RS08710 0.43 -1.6
1,750,540 - A4249_RS08710 0.43 -0.6
1,750,540 - A4249_RS08710 0.43 -0.5
1,750,540 - A4249_RS08710 0.43 +0.5
1,750,540 - A4249_RS08710 0.43 +0.2
1,750,540 - A4249_RS08710 0.43 +0.2
1,750,540 - A4249_RS08710 0.43 +1.1
1,750,605 + A4249_RS08710 0.49 +0.7
1,750,780 + A4249_RS08710 0.66 +0.7
1,750,780 + A4249_RS08710 0.66 +1.0
1,750,780 + A4249_RS08710 0.66 +0.2
1,750,780 + A4249_RS08710 0.66 +1.3
1,750,780 + A4249_RS08710 0.66 -0.0
1,750,780 + A4249_RS08710 0.66 -0.5
1,750,780 + A4249_RS08710 0.66 -1.6
1,750,780 + A4249_RS08710 0.66 +1.4
1,750,780 + A4249_RS08710 0.66 -1.2
1,750,781 - A4249_RS08710 0.66 -0.1
1,750,781 - A4249_RS08710 0.66 +0.2
1,750,781 - A4249_RS08710 0.66 +0.6
1,750,781 - A4249_RS08710 0.66 -0.9
1,750,782 + A4249_RS08710 0.66 -0.6
1,750,782 + A4249_RS08710 0.66 +0.1
1,750,782 + A4249_RS08710 0.66 -2.2
1,750,782 + A4249_RS08710 0.66 -1.3
1,750,782 + A4249_RS08710 0.66 -1.3
1,750,782 + A4249_RS08710 0.66 +1.2
1,750,783 - A4249_RS08710 0.66 -1.6
1,750,783 - A4249_RS08710 0.66 +0.2
1,750,783 - A4249_RS08710 0.66 +1.5
1,750,783 - A4249_RS08710 0.66 +0.4
1,750,783 - A4249_RS08710 0.66 -0.5
1,750,783 - A4249_RS08710 0.66 -2.7
1,750,783 - A4249_RS08710 0.66 +0.4
1,750,902 + A4249_RS08710 0.78 -0.3
1,750,903 - A4249_RS08710 0.78 -0.8
1,751,064 + +0.5
1,751,064 + -0.3
1,751,064 + +0.8
1,751,064 + +1.2
1,751,065 - -0.5
1,751,065 - -0.1
1,751,065 - -0.9
1,751,065 - +0.0
1,751,065 - +1.2
1,751,065 - +0.0
1,751,085 + -0.8
1,751,086 - -1.2
1,751,086 - -0.8
1,751,324 + A4249_RS08715 0.29 -0.8
1,751,325 - A4249_RS08715 0.29 -0.1
1,751,325 - A4249_RS08715 0.29 +0.7
1,751,484 + A4249_RS08715 0.61 -1.1
1,751,484 + A4249_RS08715 0.61 +1.2
1,751,484 + A4249_RS08715 0.61 -0.8
1,751,484 + A4249_RS08715 0.61 -1.9
1,751,484 + A4249_RS08715 0.61 +0.5
1,751,484 + A4249_RS08715 0.61 -1.7
1,751,484 + A4249_RS08715 0.61 +0.7
1,751,484 + A4249_RS08715 0.61 +0.7
1,751,485 - A4249_RS08715 0.61 -0.3
1,751,485 - A4249_RS08715 0.61 -1.2
1,751,485 - A4249_RS08715 0.61 -1.1
1,751,485 - A4249_RS08715 0.61 -0.7
1,751,622 + A4249_RS08715 0.89 -0.5
1,751,622 + A4249_RS08715 0.89 -1.0
1,751,622 + A4249_RS08715 0.89 -0.4
1,751,622 + A4249_RS08715 0.89 +0.1
1,751,622 + A4249_RS08715 0.89 -1.1
1,751,622 + A4249_RS08715 0.89 -0.3
1,751,622 + A4249_RS08715 0.89 +0.3
1,751,622 + A4249_RS08715 0.89 -0.6
1,751,622 + A4249_RS08715 0.89 +0.3
1,751,622 + A4249_RS08715 0.89 +0.5
1,751,623 - A4249_RS08715 0.89 -0.2
1,751,623 - A4249_RS08715 0.89 -0.9
1,751,623 - A4249_RS08715 0.89 -0.6
1,751,623 - A4249_RS08715 0.89 -0.1
1,751,623 - A4249_RS08715 0.89 +0.2
1,751,623 - A4249_RS08715 0.89 -0.4
1,751,623 - A4249_RS08715 0.89 +0.4
1,751,623 - A4249_RS08715 0.89 -0.7
1,751,623 - A4249_RS08715 0.89 -0.3
1,751,624 + A4249_RS08715 0.89 -0.5
1,751,624 + A4249_RS08715 0.89 -0.6
1,751,624 + A4249_RS08715 0.89 +0.2
1,751,624 + A4249_RS08715 0.89 -0.4
1,751,625 - A4249_RS08715 0.89 +0.1
1,751,625 - A4249_RS08715 0.89 -0.3
1,751,625 - A4249_RS08715 0.89 -0.3
1,751,703 - -1.1
1,751,912 + A4249_RS08720 0.60 -0.1
1,751,913 - A4249_RS08720 0.60 -0.8
1,752,025 + A4249_RS08720 0.88 -0.7
1,752,025 + A4249_RS08720 0.88 -0.6
1,752,025 + A4249_RS08720 0.88 +1.1
1,752,025 + A4249_RS08720 0.88 +0.5
1,752,025 + A4249_RS08720 0.88 +1.4
1,752,025 + A4249_RS08720 0.88 -1.1
1,752,025 + A4249_RS08720 0.88 +0.4
1,752,026 - A4249_RS08720 0.89 +1.5
1,752,026 - A4249_RS08720 0.89 -0.9
1,752,037 + +1.0

Or see this region's nucleotide sequence