Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08705

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08695 and A4249_RS08700 overlap by 4 nucleotidesA4249_RS08700 and A4249_RS08705 are separated by 192 nucleotidesA4249_RS08705 and A4249_RS08710 are separated by 3 nucleotides A4249_RS08695: A4249_RS08695 - 7-carboxy-7-deazaguanine synthase, at 1,746,918 to 1,747,553 _RS08695 A4249_RS08700: A4249_RS08700 - 7-cyano-7-deazaguanine synthase QueC, at 1,747,550 to 1,748,281 _RS08700 A4249_RS08705: A4249_RS08705 - response regulator, at 1,748,474 to 1,750,096 _RS08705 A4249_RS08710: A4249_RS08710 - ligase-associated DNA damage response exonuclease, at 1,750,100 to 1,751,131 _RS08710 Position (kb) 1748 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1747.546 kb on + strandat 1747.547 kb on - strandat 1747.621 kb on - strandat 1747.656 kb on + strand, within A4249_RS08700at 1747.657 kb on - strand, within A4249_RS08700at 1747.778 kb on - strand, within A4249_RS08700at 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.358 kb on + strandat 1748.359 kb on - strandat 1748.359 kb on - strandat 1748.359 kb on - strandat 1748.359 kb on - strandat 1748.359 kb on - strandat 1748.359 kb on - strandat 1748.391 kb on + strandat 1748.391 kb on + strandat 1748.391 kb on + strandat 1748.392 kb on - strandat 1748.392 kb on - strandat 1748.392 kb on - strandat 1748.392 kb on - strandat 1748.416 kb on + strandat 1748.416 kb on + strandat 1748.417 kb on - strandat 1748.417 kb on - strandat 1748.444 kb on + strandat 1748.445 kb on - strandat 1748.445 kb on - strandat 1748.457 kb on + strandat 1748.457 kb on + strandat 1748.473 kb on + strandat 1748.473 kb on + strandat 1748.474 kb on - strandat 1748.569 kb on + strandat 1748.570 kb on - strandat 1748.669 kb on + strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.670 kb on - strand, within A4249_RS08705at 1748.816 kb on + strand, within A4249_RS08705at 1748.816 kb on + strand, within A4249_RS08705at 1748.817 kb on - strand, within A4249_RS08705at 1749.047 kb on - strand, within A4249_RS08705at 1749.047 kb on - strand, within A4249_RS08705at 1749.047 kb on - strand, within A4249_RS08705at 1749.328 kb on + strand, within A4249_RS08705at 1749.373 kb on + strand, within A4249_RS08705at 1749.713 kb on - strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.877 kb on + strand, within A4249_RS08705at 1749.878 kb on - strand, within A4249_RS08705at 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.959 kb on + strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1749.960 kb on - strandat 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.503 kb on + strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.504 kb on - strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.539 kb on + strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.540 kb on - strand, within A4249_RS08710at 1750.605 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.902 kb on + strand, within A4249_RS08710at 1750.903 kb on - strand, within A4249_RS08710at 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.085 kb on + strandat 1751.086 kb on - strandat 1751.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,747,546 + +1.5
1,747,547 - -1.5
1,747,621 - +0.3
1,747,656 + A4249_RS08700 0.14 +0.9
1,747,657 - A4249_RS08700 0.15 +1.8
1,747,778 - A4249_RS08700 0.31 +0.5
1,748,358 + +0.1
1,748,358 + +0.7
1,748,358 + -0.0
1,748,358 + -1.9
1,748,358 + +0.9
1,748,358 + +0.7
1,748,358 + -2.1
1,748,358 + -0.2
1,748,358 + +1.4
1,748,358 + +0.5
1,748,358 + -0.4
1,748,358 + +0.3
1,748,358 + +0.4
1,748,358 + +1.3
1,748,358 + +1.5
1,748,358 + -1.9
1,748,358 + -1.6
1,748,359 - +0.7
1,748,359 - +0.1
1,748,359 - -0.9
1,748,359 - +0.4
1,748,359 - -1.1
1,748,359 - -0.7
1,748,391 + +0.1
1,748,391 + +0.5
1,748,391 + +0.9
1,748,392 - -1.2
1,748,392 - +1.1
1,748,392 - +0.8
1,748,392 - -1.1
1,748,416 + -0.7
1,748,416 + +0.8
1,748,417 - -0.9
1,748,417 - -1.7
1,748,444 + -1.0
1,748,445 - -1.5
1,748,445 - +0.2
1,748,457 + -0.0
1,748,457 + -0.1
1,748,473 + +0.9
1,748,473 + +1.3
1,748,474 - +0.4
1,748,569 + -1.6
1,748,570 - +0.7
1,748,669 + A4249_RS08705 0.12 -0.0
1,748,670 - A4249_RS08705 0.12 +0.2
1,748,670 - A4249_RS08705 0.12 -0.7
1,748,670 - A4249_RS08705 0.12 -1.6
1,748,670 - A4249_RS08705 0.12 -0.3
1,748,670 - A4249_RS08705 0.12 +0.4
1,748,670 - A4249_RS08705 0.12 -1.1
1,748,816 + A4249_RS08705 0.21 -0.3
1,748,816 + A4249_RS08705 0.21 -1.4
1,748,817 - A4249_RS08705 0.21 -2.0
1,749,047 - A4249_RS08705 0.35 +0.5
1,749,047 - A4249_RS08705 0.35 -0.1
1,749,047 - A4249_RS08705 0.35 -0.1
1,749,328 + A4249_RS08705 0.53 +1.4
1,749,373 + A4249_RS08705 0.55 -0.1
1,749,713 - A4249_RS08705 0.76 +0.6
1,749,877 + A4249_RS08705 0.86 -1.5
1,749,877 + A4249_RS08705 0.86 -0.9
1,749,877 + A4249_RS08705 0.86 -0.5
1,749,877 + A4249_RS08705 0.86 -0.6
1,749,878 - A4249_RS08705 0.87 -0.2
1,749,959 + -0.9
1,749,959 + -0.5
1,749,959 + -0.1
1,749,959 + +0.5
1,749,959 + +0.7
1,749,959 + -0.7
1,749,959 + -0.4
1,749,959 + +0.8
1,749,960 - -1.2
1,749,960 - -1.1
1,749,960 - -2.1
1,749,960 - -0.7
1,749,960 - -0.7
1,749,960 - +0.8
1,750,503 + A4249_RS08710 0.39 -0.0
1,750,503 + A4249_RS08710 0.39 -0.6
1,750,503 + A4249_RS08710 0.39 +1.2
1,750,503 + A4249_RS08710 0.39 -0.7
1,750,503 + A4249_RS08710 0.39 +0.1
1,750,504 - A4249_RS08710 0.39 -0.8
1,750,504 - A4249_RS08710 0.39 -1.1
1,750,504 - A4249_RS08710 0.39 -1.8
1,750,504 - A4249_RS08710 0.39 +0.1
1,750,504 - A4249_RS08710 0.39 -0.9
1,750,539 + A4249_RS08710 0.43 -0.1
1,750,539 + A4249_RS08710 0.43 +0.0
1,750,539 + A4249_RS08710 0.43 -0.4
1,750,539 + A4249_RS08710 0.43 +0.7
1,750,539 + A4249_RS08710 0.43 -2.3
1,750,539 + A4249_RS08710 0.43 -0.3
1,750,539 + A4249_RS08710 0.43 -0.3
1,750,539 + A4249_RS08710 0.43 +0.1
1,750,539 + A4249_RS08710 0.43 +0.1
1,750,539 + A4249_RS08710 0.43 -0.5
1,750,540 - A4249_RS08710 0.43 -1.3
1,750,540 - A4249_RS08710 0.43 +0.9
1,750,540 - A4249_RS08710 0.43 +1.5
1,750,540 - A4249_RS08710 0.43 +1.3
1,750,540 - A4249_RS08710 0.43 -0.2
1,750,540 - A4249_RS08710 0.43 +0.4
1,750,540 - A4249_RS08710 0.43 +0.1
1,750,540 - A4249_RS08710 0.43 -0.0
1,750,540 - A4249_RS08710 0.43 +0.5
1,750,540 - A4249_RS08710 0.43 -0.1
1,750,540 - A4249_RS08710 0.43 -1.6
1,750,540 - A4249_RS08710 0.43 -0.6
1,750,540 - A4249_RS08710 0.43 -0.5
1,750,540 - A4249_RS08710 0.43 +0.5
1,750,540 - A4249_RS08710 0.43 +0.2
1,750,540 - A4249_RS08710 0.43 +0.2
1,750,540 - A4249_RS08710 0.43 +1.1
1,750,605 + A4249_RS08710 0.49 +0.7
1,750,780 + A4249_RS08710 0.66 +0.7
1,750,780 + A4249_RS08710 0.66 +1.0
1,750,780 + A4249_RS08710 0.66 +0.2
1,750,780 + A4249_RS08710 0.66 +1.3
1,750,780 + A4249_RS08710 0.66 -0.0
1,750,780 + A4249_RS08710 0.66 -0.5
1,750,780 + A4249_RS08710 0.66 -1.6
1,750,780 + A4249_RS08710 0.66 +1.4
1,750,780 + A4249_RS08710 0.66 -1.2
1,750,781 - A4249_RS08710 0.66 -0.1
1,750,781 - A4249_RS08710 0.66 +0.2
1,750,781 - A4249_RS08710 0.66 +0.6
1,750,781 - A4249_RS08710 0.66 -0.9
1,750,782 + A4249_RS08710 0.66 -0.6
1,750,782 + A4249_RS08710 0.66 +0.1
1,750,782 + A4249_RS08710 0.66 -2.2
1,750,782 + A4249_RS08710 0.66 -1.3
1,750,782 + A4249_RS08710 0.66 -1.3
1,750,782 + A4249_RS08710 0.66 +1.2
1,750,783 - A4249_RS08710 0.66 -1.6
1,750,783 - A4249_RS08710 0.66 +0.2
1,750,783 - A4249_RS08710 0.66 +1.5
1,750,783 - A4249_RS08710 0.66 +0.4
1,750,783 - A4249_RS08710 0.66 -0.5
1,750,783 - A4249_RS08710 0.66 -2.7
1,750,783 - A4249_RS08710 0.66 +0.4
1,750,902 + A4249_RS08710 0.78 -0.3
1,750,903 - A4249_RS08710 0.78 -0.8
1,751,064 + +0.5
1,751,064 + -0.3
1,751,064 + +0.8
1,751,064 + +1.2
1,751,065 - -0.5
1,751,065 - -0.1
1,751,065 - -0.9
1,751,065 - +0.0
1,751,065 - +1.2
1,751,065 - +0.0
1,751,085 + -0.8
1,751,086 - -1.2
1,751,086 - -0.8

Or see this region's nucleotide sequence