Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08175

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08160 and A4249_RS08165 are separated by 13 nucleotidesA4249_RS08165 and A4249_RS08170 are separated by 70 nucleotidesA4249_RS08170 and A4249_RS08175 are separated by 96 nucleotidesA4249_RS08175 and A4249_RS17045 are separated by 95 nucleotidesA4249_RS17045 and A4249_RS08180 are separated by 146 nucleotides A4249_RS08160: A4249_RS08160 - transcription termination/antitermination protein NusG, at 1,640,042 to 1,640,617 _RS08160 A4249_RS08165: A4249_RS08165 - preprotein translocase subunit SecE, at 1,640,631 to 1,640,927 _RS08165 A4249_RS08170: A4249_RS08170 - tRNA-Trp, at 1,640,998 to 1,641,073 _RS08170 A4249_RS08175: A4249_RS08175 - hemolysin family protein, at 1,641,170 to 1,642,504 _RS08175 A4249_RS17045: A4249_RS17045 - hypothetical protein, at 1,642,600 to 1,642,734 _RS17045 A4249_RS08180: A4249_RS08180 - aspartate--tRNA ligase, at 1,642,881 to 1,644,713 _RS08180 Position (kb) 1641 1642 1643Strain fitness (log2 ratio) -3 -2 -1 0 1at 1641.263 kb on - strandat 1641.552 kb on + strand, within A4249_RS08175at 1641.552 kb on + strand, within A4249_RS08175at 1641.552 kb on + strand, within A4249_RS08175at 1641.553 kb on - strand, within A4249_RS08175at 1641.566 kb on - strand, within A4249_RS08175at 1641.566 kb on - strand, within A4249_RS08175at 1642.013 kb on + strand, within A4249_RS08175at 1642.014 kb on - strand, within A4249_RS08175at 1642.014 kb on - strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.164 kb on + strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.165 kb on - strand, within A4249_RS08175at 1642.207 kb on + strand, within A4249_RS08175at 1642.208 kb on - strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.209 kb on + strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.210 kb on - strand, within A4249_RS08175at 1642.277 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.278 kb on + strand, within A4249_RS08175at 1642.279 kb on - strand, within A4249_RS08175at 1642.403 kb on + strandat 1642.403 kb on + strandat 1642.403 kb on + strandat 1642.403 kb on + strandat 1642.404 kb on - strandat 1642.404 kb on - strandat 1642.404 kb on - strandat 1642.499 kb on + strandat 1642.499 kb on + strandat 1642.499 kb on + strandat 1642.500 kb on - strandat 1642.500 kb on - strandat 1642.506 kb on + strandat 1642.507 kb on - strandat 1642.555 kb on + strandat 1642.555 kb on + strandat 1642.555 kb on + strandat 1642.556 kb on - strandat 1642.556 kb on - strandat 1642.556 kb on - strandat 1642.556 kb on - strandat 1642.560 kb on + strandat 1642.560 kb on + strandat 1642.560 kb on + strandat 1642.561 kb on - strandat 1642.561 kb on - strandat 1642.561 kb on - strandat 1642.664 kb on + strand, within A4249_RS17045at 1642.664 kb on + strand, within A4249_RS17045at 1642.664 kb on + strand, within A4249_RS17045at 1642.664 kb on + strand, within A4249_RS17045at 1642.664 kb on + strand, within A4249_RS17045at 1642.664 kb on + strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.665 kb on - strand, within A4249_RS17045at 1642.769 kb on + strandat 1642.769 kb on + strandat 1642.769 kb on + strandat 1642.769 kb on + strandat 1642.770 kb on - strandat 1642.770 kb on - strandat 1642.770 kb on - strandat 1642.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,641,263 - -0.2
1,641,552 + A4249_RS08175 0.29 -0.5
1,641,552 + A4249_RS08175 0.29 -1.5
1,641,552 + A4249_RS08175 0.29 +0.1
1,641,553 - A4249_RS08175 0.29 +0.0
1,641,566 - A4249_RS08175 0.30 -1.3
1,641,566 - A4249_RS08175 0.30 -0.7
1,642,013 + A4249_RS08175 0.63 -0.4
1,642,014 - A4249_RS08175 0.63 -0.9
1,642,014 - A4249_RS08175 0.63 -0.4
1,642,164 + A4249_RS08175 0.74 -0.5
1,642,164 + A4249_RS08175 0.74 -0.3
1,642,164 + A4249_RS08175 0.74 -0.3
1,642,164 + A4249_RS08175 0.74 -0.4
1,642,164 + A4249_RS08175 0.74 -0.3
1,642,164 + A4249_RS08175 0.74 -0.1
1,642,164 + A4249_RS08175 0.74 -0.4
1,642,164 + A4249_RS08175 0.74 -0.2
1,642,164 + A4249_RS08175 0.74 -0.6
1,642,164 + A4249_RS08175 0.74 -0.7
1,642,164 + A4249_RS08175 0.74 +0.0
1,642,164 + A4249_RS08175 0.74 -0.5
1,642,164 + A4249_RS08175 0.74 -0.8
1,642,165 - A4249_RS08175 0.75 -0.1
1,642,165 - A4249_RS08175 0.75 -0.4
1,642,165 - A4249_RS08175 0.75 +0.1
1,642,165 - A4249_RS08175 0.75 -1.0
1,642,165 - A4249_RS08175 0.75 -0.3
1,642,165 - A4249_RS08175 0.75 -0.5
1,642,165 - A4249_RS08175 0.75 -0.5
1,642,165 - A4249_RS08175 0.75 -0.1
1,642,165 - A4249_RS08175 0.75 -0.7
1,642,165 - A4249_RS08175 0.75 -0.6
1,642,165 - A4249_RS08175 0.75 -0.2
1,642,165 - A4249_RS08175 0.75 +0.5
1,642,207 + A4249_RS08175 0.78 -0.4
1,642,208 - A4249_RS08175 0.78 +0.1
1,642,209 + A4249_RS08175 0.78 -0.1
1,642,209 + A4249_RS08175 0.78 +0.2
1,642,209 + A4249_RS08175 0.78 +0.1
1,642,209 + A4249_RS08175 0.78 +0.5
1,642,209 + A4249_RS08175 0.78 -0.6
1,642,209 + A4249_RS08175 0.78 -0.4
1,642,209 + A4249_RS08175 0.78 -0.4
1,642,209 + A4249_RS08175 0.78 -0.6
1,642,209 + A4249_RS08175 0.78 +0.2
1,642,210 - A4249_RS08175 0.78 -0.9
1,642,210 - A4249_RS08175 0.78 -0.6
1,642,210 - A4249_RS08175 0.78 +0.6
1,642,210 - A4249_RS08175 0.78 -0.6
1,642,210 - A4249_RS08175 0.78 -0.8
1,642,210 - A4249_RS08175 0.78 -0.5
1,642,210 - A4249_RS08175 0.78 -0.5
1,642,277 + A4249_RS08175 0.83 -0.1
1,642,278 + A4249_RS08175 0.83 -0.2
1,642,278 + A4249_RS08175 0.83 -0.4
1,642,278 + A4249_RS08175 0.83 -0.2
1,642,278 + A4249_RS08175 0.83 -0.2
1,642,278 + A4249_RS08175 0.83 -0.5
1,642,278 + A4249_RS08175 0.83 +0.2
1,642,278 + A4249_RS08175 0.83 -1.3
1,642,278 + A4249_RS08175 0.83 -0.2
1,642,279 - A4249_RS08175 0.83 -0.4
1,642,403 + -0.5
1,642,403 + +0.1
1,642,403 + -0.8
1,642,403 + -0.3
1,642,404 - +0.1
1,642,404 - -0.1
1,642,404 - -0.4
1,642,499 + -0.7
1,642,499 + +0.5
1,642,499 + -0.3
1,642,500 - -0.2
1,642,500 - -0.4
1,642,506 + -0.0
1,642,507 - -0.2
1,642,555 + -0.5
1,642,555 + -0.3
1,642,555 + -0.5
1,642,556 - -0.6
1,642,556 - -0.3
1,642,556 - -0.5
1,642,556 - +1.4
1,642,560 + -0.4
1,642,560 + -0.3
1,642,560 + -0.3
1,642,561 - -0.4
1,642,561 - +0.1
1,642,561 - -0.8
1,642,664 + A4249_RS17045 0.47 +0.7
1,642,664 + A4249_RS17045 0.47 -0.0
1,642,664 + A4249_RS17045 0.47 -0.2
1,642,664 + A4249_RS17045 0.47 -0.0
1,642,664 + A4249_RS17045 0.47 -0.2
1,642,664 + A4249_RS17045 0.47 -1.3
1,642,665 - A4249_RS17045 0.48 -0.4
1,642,665 - A4249_RS17045 0.48 +0.2
1,642,665 - A4249_RS17045 0.48 -2.9
1,642,665 - A4249_RS17045 0.48 +0.1
1,642,665 - A4249_RS17045 0.48 -0.5
1,642,665 - A4249_RS17045 0.48 -0.7
1,642,665 - A4249_RS17045 0.48 -0.2
1,642,665 - A4249_RS17045 0.48 +0.9
1,642,769 + +0.1
1,642,769 + +0.5
1,642,769 + -1.3
1,642,769 + +0.2
1,642,770 - +0.3
1,642,770 - -1.9
1,642,770 - +0.4
1,642,770 - +1.3

Or see this region's nucleotide sequence