Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08025

Experiment: Cytidine 0.41115 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS08015 and A4249_RS08020 are separated by 155 nucleotidesA4249_RS08020 and A4249_RS08025 are separated by 26 nucleotidesA4249_RS08025 and A4249_RS08030 overlap by 4 nucleotidesA4249_RS08030 and A4249_RS08035 are separated by 206 nucleotides A4249_RS08015: A4249_RS08015 - signal peptidase I, at 1,603,521 to 1,604,285 _RS08015 A4249_RS08020: A4249_RS08020 - EF-hand domain-containing protein, at 1,604,441 to 1,604,779 _RS08020 A4249_RS08025: A4249_RS08025 - DUF2155 domain-containing protein, at 1,604,806 to 1,605,459 _RS08025 A4249_RS08030: A4249_RS08030 - NADH:ubiquinone oxidoreductase subunit NDUFA12, at 1,605,456 to 1,605,848 _RS08030 A4249_RS08035: A4249_RS08035 - TSCPD domain-containing protein, at 1,606,055 to 1,608,592 _RS08035 Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -1 0 1 2 3at 1603.953 kb on + strand, within A4249_RS08015at 1603.954 kb on - strand, within A4249_RS08015at 1603.954 kb on - strand, within A4249_RS08015at 1603.954 kb on - strand, within A4249_RS08015at 1603.954 kb on - strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.013 kb on + strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.014 kb on - strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.022 kb on + strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.023 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.086 kb on - strand, within A4249_RS08015at 1604.245 kb on + strandat 1604.245 kb on + strandat 1604.246 kb on - strandat 1604.246 kb on - strandat 1604.283 kb on + strandat 1604.283 kb on + strandat 1604.283 kb on + strandat 1604.283 kb on + strandat 1604.283 kb on + strandat 1604.454 kb on + strandat 1604.454 kb on + strandat 1604.649 kb on - strand, within A4249_RS08020at 1604.704 kb on + strand, within A4249_RS08020at 1604.705 kb on - strand, within A4249_RS08020at 1604.705 kb on - strand, within A4249_RS08020at 1604.801 kb on + strandat 1604.801 kb on + strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.802 kb on - strandat 1604.815 kb on - strandat 1604.837 kb on + strandat 1604.945 kb on + strand, within A4249_RS08025at 1604.945 kb on + strand, within A4249_RS08025at 1604.945 kb on + strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1604.946 kb on - strand, within A4249_RS08025at 1605.226 kb on + strand, within A4249_RS08025at 1605.478 kb on + strandat 1605.479 kb on - strandat 1605.909 kb on - strandat 1605.961 kb on - strandat 1606.021 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
remove
1,603,953 + A4249_RS08015 0.56 -0.2
1,603,954 - A4249_RS08015 0.57 -0.3
1,603,954 - A4249_RS08015 0.57 +0.2
1,603,954 - A4249_RS08015 0.57 -1.5
1,603,954 - A4249_RS08015 0.57 +1.1
1,604,013 + A4249_RS08015 0.64 -1.2
1,604,013 + A4249_RS08015 0.64 -1.4
1,604,013 + A4249_RS08015 0.64 -0.3
1,604,013 + A4249_RS08015 0.64 -0.2
1,604,013 + A4249_RS08015 0.64 +0.0
1,604,013 + A4249_RS08015 0.64 -0.5
1,604,013 + A4249_RS08015 0.64 -0.1
1,604,013 + A4249_RS08015 0.64 +0.3
1,604,013 + A4249_RS08015 0.64 +0.7
1,604,013 + A4249_RS08015 0.64 +0.7
1,604,013 + A4249_RS08015 0.64 +0.1
1,604,013 + A4249_RS08015 0.64 +0.7
1,604,013 + A4249_RS08015 0.64 -0.3
1,604,013 + A4249_RS08015 0.64 -0.8
1,604,014 - A4249_RS08015 0.64 +0.4
1,604,014 - A4249_RS08015 0.64 -0.2
1,604,014 - A4249_RS08015 0.64 -1.3
1,604,014 - A4249_RS08015 0.64 +0.2
1,604,014 - A4249_RS08015 0.64 +2.1
1,604,014 - A4249_RS08015 0.64 -0.0
1,604,014 - A4249_RS08015 0.64 -0.6
1,604,014 - A4249_RS08015 0.64 +0.7
1,604,014 - A4249_RS08015 0.64 +0.4
1,604,014 - A4249_RS08015 0.64 -0.4
1,604,014 - A4249_RS08015 0.64 -0.5
1,604,014 - A4249_RS08015 0.64 -1.5
1,604,014 - A4249_RS08015 0.64 +1.0
1,604,022 + A4249_RS08015 0.65 +0.5
1,604,022 + A4249_RS08015 0.65 +0.5
1,604,022 + A4249_RS08015 0.65 +0.5
1,604,022 + A4249_RS08015 0.65 +0.1
1,604,022 + A4249_RS08015 0.65 -0.6
1,604,022 + A4249_RS08015 0.65 +0.3
1,604,023 - A4249_RS08015 0.66 +0.3
1,604,023 - A4249_RS08015 0.66 +0.0
1,604,023 - A4249_RS08015 0.66 +0.5
1,604,023 - A4249_RS08015 0.66 -1.2
1,604,023 - A4249_RS08015 0.66 +0.3
1,604,023 - A4249_RS08015 0.66 -0.7
1,604,023 - A4249_RS08015 0.66 -0.0
1,604,086 - A4249_RS08015 0.74 -1.0
1,604,086 - A4249_RS08015 0.74 -1.5
1,604,086 - A4249_RS08015 0.74 +0.0
1,604,086 - A4249_RS08015 0.74 +0.5
1,604,086 - A4249_RS08015 0.74 -1.4
1,604,086 - A4249_RS08015 0.74 -0.2
1,604,245 + -0.9
1,604,245 + -0.2
1,604,246 - -0.6
1,604,246 - +1.3
1,604,283 + -0.6
1,604,283 + -1.1
1,604,283 + -0.5
1,604,283 + +0.0
1,604,283 + +0.3
1,604,454 + +0.7
1,604,454 + -0.2
1,604,649 - A4249_RS08020 0.61 -0.1
1,604,704 + A4249_RS08020 0.78 +0.3
1,604,705 - A4249_RS08020 0.78 -0.9
1,604,705 - A4249_RS08020 0.78 +1.1
1,604,801 + +0.3
1,604,801 + -0.8
1,604,802 - -1.0
1,604,802 - -0.2
1,604,802 - +0.0
1,604,802 - -0.1
1,604,802 - +0.5
1,604,802 - -0.4
1,604,802 - +1.2
1,604,815 - +2.8
1,604,837 + +0.7
1,604,945 + A4249_RS08025 0.21 +1.3
1,604,945 + A4249_RS08025 0.21 +1.3
1,604,945 + A4249_RS08025 0.21 -0.9
1,604,946 - A4249_RS08025 0.21 +1.5
1,604,946 - A4249_RS08025 0.21 -1.1
1,604,946 - A4249_RS08025 0.21 +0.8
1,605,226 + A4249_RS08025 0.64 +1.5
1,605,478 + -0.2
1,605,479 - -0.4
1,605,909 - -0.5
1,605,961 - -0.5
1,606,021 + +1.0

Or see this region's nucleotide sequence