Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06725

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06710 and A4249_RS06715 are separated by 3 nucleotidesA4249_RS06715 and A4249_RS06720 are separated by 23 nucleotidesA4249_RS06720 and A4249_RS06725 are separated by 101 nucleotidesA4249_RS06725 and A4249_RS06730 are separated by 21 nucleotides A4249_RS06710: A4249_RS06710 - LysR family transcriptional regulator, at 1,366,255 to 1,367,181 _RS06710 A4249_RS06715: A4249_RS06715 - hemolysin, at 1,367,185 to 1,367,481 _RS06715 A4249_RS06720: A4249_RS06720 - hypothetical protein, at 1,367,505 to 1,367,717 _RS06720 A4249_RS06725: A4249_RS06725 - DNA polymerase III subunit chi, at 1,367,819 to 1,368,277 _RS06725 A4249_RS06730: A4249_RS06730 - leucyl aminopeptidase, at 1,368,299 to 1,369,774 _RS06730 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2at 1366.837 kb on + strand, within A4249_RS06710at 1366.838 kb on - strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.843 kb on + strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.844 kb on - strand, within A4249_RS06710at 1366.973 kb on + strand, within A4249_RS06710at 1366.973 kb on + strand, within A4249_RS06710at 1366.973 kb on + strand, within A4249_RS06710at 1366.973 kb on + strand, within A4249_RS06710at 1366.974 kb on - strand, within A4249_RS06710at 1366.974 kb on - strand, within A4249_RS06710at 1366.996 kb on + strand, within A4249_RS06710at 1366.996 kb on + strand, within A4249_RS06710at 1366.996 kb on + strand, within A4249_RS06710at 1366.996 kb on + strand, within A4249_RS06710at 1366.996 kb on + strand, within A4249_RS06710at 1366.997 kb on - strand, within A4249_RS06710at 1366.997 kb on - strand, within A4249_RS06710at 1366.997 kb on - strand, within A4249_RS06710at 1367.125 kb on + strandat 1367.125 kb on + strandat 1367.125 kb on + strandat 1367.125 kb on + strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.126 kb on - strandat 1367.228 kb on + strand, within A4249_RS06715at 1367.228 kb on + strand, within A4249_RS06715at 1367.229 kb on - strand, within A4249_RS06715at 1367.229 kb on - strand, within A4249_RS06715at 1367.255 kb on + strand, within A4249_RS06715at 1367.255 kb on + strand, within A4249_RS06715at 1367.255 kb on + strand, within A4249_RS06715at 1367.277 kb on + strand, within A4249_RS06715at 1367.277 kb on + strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.278 kb on - strand, within A4249_RS06715at 1367.345 kb on + strand, within A4249_RS06715at 1367.345 kb on + strand, within A4249_RS06715at 1367.345 kb on + strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.346 kb on - strand, within A4249_RS06715at 1367.354 kb on + strand, within A4249_RS06715at 1367.354 kb on + strand, within A4249_RS06715at 1367.355 kb on - strand, within A4249_RS06715at 1367.548 kb on + strand, within A4249_RS06720at 1367.548 kb on + strand, within A4249_RS06720at 1367.548 kb on + strand, within A4249_RS06720at 1367.548 kb on + strand, within A4249_RS06720at 1367.548 kb on + strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.549 kb on - strand, within A4249_RS06720at 1367.566 kb on + strand, within A4249_RS06720at 1367.566 kb on + strand, within A4249_RS06720at 1367.567 kb on - strand, within A4249_RS06720at 1367.567 kb on - strand, within A4249_RS06720at 1367.567 kb on - strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.668 kb on + strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720at 1367.669 kb on - strand, within A4249_RS06720

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,366,837 + A4249_RS06710 0.63 +0.6
1,366,838 - A4249_RS06710 0.63 -1.7
1,366,843 + A4249_RS06710 0.63 -0.1
1,366,843 + A4249_RS06710 0.63 -0.9
1,366,843 + A4249_RS06710 0.63 +0.4
1,366,843 + A4249_RS06710 0.63 +1.1
1,366,843 + A4249_RS06710 0.63 +0.2
1,366,843 + A4249_RS06710 0.63 -0.1
1,366,843 + A4249_RS06710 0.63 +0.2
1,366,843 + A4249_RS06710 0.63 +1.1
1,366,843 + A4249_RS06710 0.63 +1.8
1,366,843 + A4249_RS06710 0.63 -0.7
1,366,844 - A4249_RS06710 0.64 +0.9
1,366,844 - A4249_RS06710 0.64 -0.9
1,366,844 - A4249_RS06710 0.64 +1.0
1,366,844 - A4249_RS06710 0.64 -0.2
1,366,844 - A4249_RS06710 0.64 +0.5
1,366,844 - A4249_RS06710 0.64 +1.1
1,366,844 - A4249_RS06710 0.64 -0.6
1,366,844 - A4249_RS06710 0.64 +0.5
1,366,844 - A4249_RS06710 0.64 -0.8
1,366,844 - A4249_RS06710 0.64 +0.7
1,366,844 - A4249_RS06710 0.64 +0.9
1,366,844 - A4249_RS06710 0.64 -0.4
1,366,844 - A4249_RS06710 0.64 -0.1
1,366,844 - A4249_RS06710 0.64 -1.1
1,366,844 - A4249_RS06710 0.64 -0.4
1,366,973 + A4249_RS06710 0.77 +0.6
1,366,973 + A4249_RS06710 0.77 -0.1
1,366,973 + A4249_RS06710 0.77 -0.6
1,366,973 + A4249_RS06710 0.77 -0.0
1,366,974 - A4249_RS06710 0.78 +0.1
1,366,974 - A4249_RS06710 0.78 -0.5
1,366,996 + A4249_RS06710 0.80 +0.5
1,366,996 + A4249_RS06710 0.80 +1.1
1,366,996 + A4249_RS06710 0.80 -0.3
1,366,996 + A4249_RS06710 0.80 +0.9
1,366,996 + A4249_RS06710 0.80 -0.4
1,366,997 - A4249_RS06710 0.80 -1.0
1,366,997 - A4249_RS06710 0.80 +0.0
1,366,997 - A4249_RS06710 0.80 -2.6
1,367,125 + +2.0
1,367,125 + -1.0
1,367,125 + -0.2
1,367,125 + -0.8
1,367,126 - +0.2
1,367,126 - -0.2
1,367,126 - -0.5
1,367,126 - +0.8
1,367,126 - -0.3
1,367,126 - -0.8
1,367,126 - -0.4
1,367,228 + A4249_RS06715 0.14 -0.6
1,367,228 + A4249_RS06715 0.14 +0.0
1,367,229 - A4249_RS06715 0.15 +0.2
1,367,229 - A4249_RS06715 0.15 +0.1
1,367,255 + A4249_RS06715 0.24 +0.8
1,367,255 + A4249_RS06715 0.24 +0.9
1,367,255 + A4249_RS06715 0.24 +0.9
1,367,277 + A4249_RS06715 0.31 -0.1
1,367,277 + A4249_RS06715 0.31 -0.1
1,367,278 - A4249_RS06715 0.31 +0.8
1,367,278 - A4249_RS06715 0.31 +0.5
1,367,278 - A4249_RS06715 0.31 +0.9
1,367,278 - A4249_RS06715 0.31 +0.5
1,367,278 - A4249_RS06715 0.31 -0.9
1,367,278 - A4249_RS06715 0.31 +0.9
1,367,278 - A4249_RS06715 0.31 -0.5
1,367,345 + A4249_RS06715 0.54 -1.5
1,367,345 + A4249_RS06715 0.54 +1.1
1,367,345 + A4249_RS06715 0.54 +1.9
1,367,346 - A4249_RS06715 0.54 -0.1
1,367,346 - A4249_RS06715 0.54 -2.7
1,367,346 - A4249_RS06715 0.54 +2.1
1,367,346 - A4249_RS06715 0.54 -0.4
1,367,346 - A4249_RS06715 0.54 -0.0
1,367,346 - A4249_RS06715 0.54 +0.2
1,367,346 - A4249_RS06715 0.54 -0.4
1,367,346 - A4249_RS06715 0.54 +1.0
1,367,354 + A4249_RS06715 0.57 -0.4
1,367,354 + A4249_RS06715 0.57 +0.0
1,367,355 - A4249_RS06715 0.57 -0.4
1,367,548 + A4249_RS06720 0.20 +0.3
1,367,548 + A4249_RS06720 0.20 -0.2
1,367,548 + A4249_RS06720 0.20 -1.2
1,367,548 + A4249_RS06720 0.20 -0.8
1,367,548 + A4249_RS06720 0.20 +0.5
1,367,549 - A4249_RS06720 0.21 +0.3
1,367,549 - A4249_RS06720 0.21 +0.7
1,367,549 - A4249_RS06720 0.21 -0.7
1,367,549 - A4249_RS06720 0.21 -0.3
1,367,549 - A4249_RS06720 0.21 -1.0
1,367,549 - A4249_RS06720 0.21 -0.7
1,367,549 - A4249_RS06720 0.21 -0.8
1,367,549 - A4249_RS06720 0.21 -1.2
1,367,566 + A4249_RS06720 0.29 +1.5
1,367,566 + A4249_RS06720 0.29 -0.0
1,367,567 - A4249_RS06720 0.29 -2.3
1,367,567 - A4249_RS06720 0.29 -0.0
1,367,567 - A4249_RS06720 0.29 -0.3
1,367,668 + A4249_RS06720 0.77 -0.2
1,367,668 + A4249_RS06720 0.77 +0.2
1,367,668 + A4249_RS06720 0.77 +0.1
1,367,668 + A4249_RS06720 0.77 +0.7
1,367,668 + A4249_RS06720 0.77 +1.4
1,367,668 + A4249_RS06720 0.77 -0.5
1,367,668 + A4249_RS06720 0.77 -0.6
1,367,669 - A4249_RS06720 0.77 +1.1
1,367,669 - A4249_RS06720 0.77 -1.5
1,367,669 - A4249_RS06720 0.77 +0.7
1,367,669 - A4249_RS06720 0.77 -0.2
1,367,669 - A4249_RS06720 0.77 +0.3
1,367,669 - A4249_RS06720 0.77 -0.3
1,367,669 - A4249_RS06720 0.77 -1.0
1,367,669 - A4249_RS06720 0.77 -0.9

Or see this region's nucleotide sequence