Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06380

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06375 and A4249_RS06380 are separated by 3 nucleotidesA4249_RS06380 and A4249_RS06385 overlap by 1 nucleotidesA4249_RS06385 and A4249_RS06390 are separated by 2 nucleotides A4249_RS06375: A4249_RS06375 - NADH-quinone oxidoreductase subunit NuoH, at 1,299,136 to 1,300,209 _RS06375 A4249_RS06380: A4249_RS06380 - NADH-quinone oxidoreductase subunit NuoG, at 1,300,213 to 1,302,258 _RS06380 A4249_RS06385: A4249_RS06385 - hypothetical protein, at 1,302,258 to 1,302,647 _RS06385 A4249_RS06390: A4249_RS06390 - NADH-quinone oxidoreductase subunit NuoF, at 1,302,650 to 1,303,963 _RS06390 Position (kb) 1300 1301 1302 1303Strain fitness (log2 ratio) -1 0 1 2at 1302.298 kb on - strand, within A4249_RS06385at 1302.298 kb on - strand, within A4249_RS06385at 1302.298 kb on - strand, within A4249_RS06385at 1302.298 kb on - strand, within A4249_RS06385at 1302.298 kb on - strand, within A4249_RS06385at 1302.298 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.461 kb on - strand, within A4249_RS06385at 1302.651 kb on + strandat 1302.652 kb on - strandat 1302.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,302,298 - A4249_RS06385 0.10 +0.4
1,302,298 - A4249_RS06385 0.10 +0.5
1,302,298 - A4249_RS06385 0.10 -1.1
1,302,298 - A4249_RS06385 0.10 -0.2
1,302,298 - A4249_RS06385 0.10 +0.5
1,302,298 - A4249_RS06385 0.10 +0.6
1,302,461 - A4249_RS06385 0.52 +0.8
1,302,461 - A4249_RS06385 0.52 -1.0
1,302,461 - A4249_RS06385 0.52 -0.3
1,302,461 - A4249_RS06385 0.52 -0.1
1,302,461 - A4249_RS06385 0.52 -1.7
1,302,461 - A4249_RS06385 0.52 -0.3
1,302,461 - A4249_RS06385 0.52 -0.3
1,302,461 - A4249_RS06385 0.52 +0.3
1,302,461 - A4249_RS06385 0.52 +0.4
1,302,461 - A4249_RS06385 0.52 +0.1
1,302,461 - A4249_RS06385 0.52 -0.1
1,302,461 - A4249_RS06385 0.52 -0.5
1,302,461 - A4249_RS06385 0.52 +1.1
1,302,461 - A4249_RS06385 0.52 -0.0
1,302,461 - A4249_RS06385 0.52 -0.5
1,302,461 - A4249_RS06385 0.52 +0.9
1,302,651 + +2.1
1,302,652 - -0.8
1,302,652 - +0.1

Or see this region's nucleotide sequence