Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06175

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06170 and A4249_RS06175 overlap by 4 nucleotidesA4249_RS06175 and A4249_RS06180 are separated by 118 nucleotidesA4249_RS06180 and A4249_RS06185 overlap by 20 nucleotides A4249_RS06170: A4249_RS06170 - anthranilate phosphoribosyltransferase, at 1,255,345 to 1,256,382 _RS06170 A4249_RS06175: A4249_RS06175 - indole-3-glycerol phosphate synthase TrpC, at 1,256,379 to 1,257,173 _RS06175 A4249_RS06180: A4249_RS06180 - transcriptional repressor LexA, at 1,257,292 to 1,257,990 _RS06180 A4249_RS06185: A4249_RS06185 - ComEC/Rec2 family competence protein, at 1,257,971 to 1,260,157 _RS06185 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -1 0 1at 1256.409 kb on + strandat 1257.171 kb on + strandat 1257.171 kb on + strandat 1257.202 kb on + strandat 1257.202 kb on + strandat 1257.203 kb on - strandat 1257.203 kb on - strandat 1257.213 kb on + strandat 1257.682 kb on + strand, within A4249_RS06180at 1257.721 kb on + strand, within A4249_RS06180at 1257.721 kb on + strand, within A4249_RS06180at 1257.722 kb on - strand, within A4249_RS06180at 1257.722 kb on - strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.913 kb on + strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.914 kb on - strand, within A4249_RS06180at 1257.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,256,409 + -0.3
1,257,171 + -0.6
1,257,171 + -0.3
1,257,202 + -0.6
1,257,202 + -0.6
1,257,203 - -0.7
1,257,203 - -1.0
1,257,213 + +0.5
1,257,682 + A4249_RS06180 0.56 -1.5
1,257,721 + A4249_RS06180 0.61 -0.0
1,257,721 + A4249_RS06180 0.61 -0.5
1,257,722 - A4249_RS06180 0.62 -0.4
1,257,722 - A4249_RS06180 0.62 -0.1
1,257,913 + A4249_RS06180 0.89 +0.4
1,257,913 + A4249_RS06180 0.89 -0.1
1,257,913 + A4249_RS06180 0.89 +0.8
1,257,913 + A4249_RS06180 0.89 +0.8
1,257,914 - A4249_RS06180 0.89 +0.6
1,257,914 - A4249_RS06180 0.89 +0.6
1,257,914 - A4249_RS06180 0.89 +0.7
1,257,914 - A4249_RS06180 0.89 -0.3
1,257,914 - A4249_RS06180 0.89 +0.8
1,257,914 - A4249_RS06180 0.89 +0.2
1,257,914 - A4249_RS06180 0.89 -0.6
1,257,914 - A4249_RS06180 0.89 +0.8
1,257,982 + +0.9

Or see this region's nucleotide sequence