Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS06155 and A4249_RS06160 overlap by 4 nucleotides A4249_RS06160 and A4249_RS06165 are separated by 88 nucleotides A4249_RS06165 and A4249_RS06170 are separated by 2 nucleotides A4249_RS06170 and A4249_RS06175 overlap by 4 nucleotides A4249_RS06175 and A4249_RS06180 are separated by 118 nucleotides
A4249_RS06155: A4249_RS06155 - anthranilate synthase component I, at 1,252,946 to 1,254,463
_RS06155
A4249_RS06160: A4249_RS06160 - peptidoglycan-binding protein, at 1,254,460 to 1,254,663
_RS06160
A4249_RS06165: A4249_RS06165 - aminodeoxychorismate/anthranilate synthase component II, at 1,254,752 to 1,255,342
_RS06165
A4249_RS06170: A4249_RS06170 - anthranilate phosphoribosyltransferase, at 1,255,345 to 1,256,382
_RS06170
A4249_RS06175: A4249_RS06175 - indole-3-glycerol phosphate synthase TrpC, at 1,256,379 to 1,257,173
_RS06175
A4249_RS06180: A4249_RS06180 - transcriptional repressor LexA, at 1,257,292 to 1,257,990
_RS06180
Position (kb) 1255
1256
1257 Strain fitness (log2 ratio) -1
0
1
2 at 1254.383 kb on + strand at 1254.384 kb on - strand at 1254.384 kb on - strand at 1254.675 kb on + strand at 1254.675 kb on + strand at 1254.676 kb on - strand at 1254.689 kb on + strand at 1254.690 kb on - strand at 1254.702 kb on - strand at 1254.739 kb on + strand at 1254.739 kb on + strand at 1254.739 kb on + strand at 1254.740 kb on - strand at 1254.769 kb on + strand at 1254.773 kb on + strand at 1254.773 kb on + strand at 1254.788 kb on + strand at 1254.789 kb on - strand at 1254.789 kb on - strand at 1254.803 kb on + strand at 1254.978 kb on + strand, within A4249_RS06165 at 1254.979 kb on - strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.984 kb on + strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1254.985 kb on - strand, within A4249_RS06165 at 1255.079 kb on - strand, within A4249_RS06165 at 1255.130 kb on + strand, within A4249_RS06165 at 1255.130 kb on + strand, within A4249_RS06165 at 1255.131 kb on - strand, within A4249_RS06165 at 1255.131 kb on - strand, within A4249_RS06165 at 1255.226 kb on - strand, within A4249_RS06165 at 1255.321 kb on - strand at 1256.409 kb on + strand at 1257.171 kb on + strand at 1257.171 kb on + strand at 1257.202 kb on + strand at 1257.202 kb on + strand at 1257.203 kb on - strand at 1257.203 kb on - strand at 1257.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,254,383 + -0.9 1,254,384 - -1.0 1,254,384 - +0.1 1,254,675 + +0.7 1,254,675 + -0.3 1,254,676 - +0.9 1,254,689 + +0.9 1,254,690 - -0.7 1,254,702 - -0.4 1,254,739 + +0.6 1,254,739 + +1.1 1,254,739 + -0.7 1,254,740 - +0.7 1,254,769 + -0.6 1,254,773 + -0.3 1,254,773 + +0.1 1,254,788 + +0.1 1,254,789 - +0.2 1,254,789 - +0.2 1,254,803 + -1.2 1,254,978 + A4249_RS06165 0.38 -0.1 1,254,979 - A4249_RS06165 0.38 -0.2 1,254,984 + A4249_RS06165 0.39 +0.1 1,254,984 + A4249_RS06165 0.39 +1.1 1,254,984 + A4249_RS06165 0.39 +0.6 1,254,984 + A4249_RS06165 0.39 +0.1 1,254,984 + A4249_RS06165 0.39 +0.1 1,254,984 + A4249_RS06165 0.39 -0.2 1,254,984 + A4249_RS06165 0.39 +0.5 1,254,985 - A4249_RS06165 0.39 +1.2 1,254,985 - A4249_RS06165 0.39 +1.2 1,254,985 - A4249_RS06165 0.39 +0.2 1,254,985 - A4249_RS06165 0.39 -0.5 1,254,985 - A4249_RS06165 0.39 +2.5 1,254,985 - A4249_RS06165 0.39 -1.2 1,254,985 - A4249_RS06165 0.39 -0.4 1,254,985 - A4249_RS06165 0.39 -1.5 1,254,985 - A4249_RS06165 0.39 -1.0 1,254,985 - A4249_RS06165 0.39 +1.1 1,255,079 - A4249_RS06165 0.55 +0.2 1,255,130 + A4249_RS06165 0.64 -1.5 1,255,130 + A4249_RS06165 0.64 -0.5 1,255,131 - A4249_RS06165 0.64 +0.1 1,255,131 - A4249_RS06165 0.64 -0.4 1,255,226 - A4249_RS06165 0.80 +0.1 1,255,321 - -0.8 1,256,409 + -0.3 1,257,171 + -0.6 1,257,171 + -0.3 1,257,202 + -0.6 1,257,202 + -0.6 1,257,203 - -0.7 1,257,203 - -1.0 1,257,213 + +0.5
Or see this region's nucleotide sequence