Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06065

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06060 and A4249_RS06065 overlap by 1 nucleotidesA4249_RS06065 and A4249_RS06070 are separated by 3 nucleotidesA4249_RS06070 and A4249_RS06075 are separated by 116 nucleotides A4249_RS06060: A4249_RS06060 - porphobilinogen synthase, at 1,232,542 to 1,233,540 _RS06060 A4249_RS06065: A4249_RS06065 - GNAT family N-acetyltransferase, at 1,233,540 to 1,234,031 _RS06065 A4249_RS06070: A4249_RS06070 - NAD(P)-dependent oxidoreductase, at 1,234,035 to 1,234,895 _RS06070 A4249_RS06075: A4249_RS06075 - flagellar motor protein MotB, at 1,235,012 to 1,235,902 _RS06075 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.627 kb on + strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.628 kb on - strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.629 kb on + strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.630 kb on - strand, within A4249_RS06065at 1233.633 kb on + strand, within A4249_RS06065at 1233.633 kb on + strand, within A4249_RS06065at 1233.633 kb on + strand, within A4249_RS06065at 1233.634 kb on - strand, within A4249_RS06065at 1233.634 kb on - strand, within A4249_RS06065at 1233.634 kb on - strand, within A4249_RS06065at 1233.634 kb on - strand, within A4249_RS06065at 1233.634 kb on - strand, within A4249_RS06065at 1233.805 kb on + strand, within A4249_RS06065at 1233.911 kb on + strand, within A4249_RS06065at 1233.912 kb on - strand, within A4249_RS06065at 1233.912 kb on - strand, within A4249_RS06065at 1233.912 kb on - strand, within A4249_RS06065at 1234.029 kb on + strandat 1234.029 kb on + strandat 1234.029 kb on + strandat 1234.030 kb on - strandat 1234.030 kb on - strandat 1234.030 kb on - strandat 1234.111 kb on + strandat 1234.112 kb on - strandat 1234.112 kb on - strandat 1234.112 kb on - strandat 1234.298 kb on - strand, within A4249_RS06070at 1234.298 kb on - strand, within A4249_RS06070at 1234.298 kb on - strand, within A4249_RS06070at 1234.298 kb on - strand, within A4249_RS06070at 1234.350 kb on + strand, within A4249_RS06070at 1234.350 kb on + strand, within A4249_RS06070at 1234.351 kb on - strand, within A4249_RS06070at 1234.424 kb on + strand, within A4249_RS06070at 1234.424 kb on + strand, within A4249_RS06070at 1234.424 kb on + strand, within A4249_RS06070at 1234.424 kb on + strand, within A4249_RS06070at 1234.424 kb on + strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.425 kb on - strand, within A4249_RS06070at 1234.444 kb on + strand, within A4249_RS06070at 1234.444 kb on + strand, within A4249_RS06070at 1234.444 kb on + strand, within A4249_RS06070at 1234.444 kb on + strand, within A4249_RS06070at 1234.445 kb on - strand, within A4249_RS06070at 1234.445 kb on - strand, within A4249_RS06070at 1234.445 kb on - strand, within A4249_RS06070at 1234.619 kb on + strand, within A4249_RS06070at 1234.619 kb on + strand, within A4249_RS06070at 1234.619 kb on + strand, within A4249_RS06070at 1234.620 kb on - strand, within A4249_RS06070at 1234.620 kb on - strand, within A4249_RS06070at 1234.620 kb on - strand, within A4249_RS06070at 1234.802 kb on + strand, within A4249_RS06070at 1234.802 kb on + strand, within A4249_RS06070at 1234.802 kb on + strand, within A4249_RS06070at 1234.802 kb on + strand, within A4249_RS06070at 1234.802 kb on + strand, within A4249_RS06070at 1234.803 kb on - strand, within A4249_RS06070at 1234.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,233,627 + A4249_RS06065 0.18 +1.2
1,233,627 + A4249_RS06065 0.18 +0.1
1,233,627 + A4249_RS06065 0.18 -0.4
1,233,627 + A4249_RS06065 0.18 +0.5
1,233,627 + A4249_RS06065 0.18 +2.0
1,233,627 + A4249_RS06065 0.18 +0.7
1,233,627 + A4249_RS06065 0.18 -2.2
1,233,627 + A4249_RS06065 0.18 -1.1
1,233,627 + A4249_RS06065 0.18 +0.2
1,233,627 + A4249_RS06065 0.18 +0.2
1,233,627 + A4249_RS06065 0.18 +0.0
1,233,627 + A4249_RS06065 0.18 +0.6
1,233,627 + A4249_RS06065 0.18 -0.1
1,233,627 + A4249_RS06065 0.18 -0.7
1,233,627 + A4249_RS06065 0.18 -0.4
1,233,627 + A4249_RS06065 0.18 +0.2
1,233,627 + A4249_RS06065 0.18 -0.1
1,233,627 + A4249_RS06065 0.18 +0.5
1,233,627 + A4249_RS06065 0.18 +0.6
1,233,627 + A4249_RS06065 0.18 +0.2
1,233,628 - A4249_RS06065 0.18 -1.1
1,233,628 - A4249_RS06065 0.18 +0.0
1,233,628 - A4249_RS06065 0.18 -1.2
1,233,628 - A4249_RS06065 0.18 +0.0
1,233,628 - A4249_RS06065 0.18 -0.6
1,233,628 - A4249_RS06065 0.18 +1.2
1,233,628 - A4249_RS06065 0.18 +0.9
1,233,628 - A4249_RS06065 0.18 -1.4
1,233,628 - A4249_RS06065 0.18 +0.4
1,233,628 - A4249_RS06065 0.18 -0.0
1,233,628 - A4249_RS06065 0.18 -0.4
1,233,628 - A4249_RS06065 0.18 -0.9
1,233,628 - A4249_RS06065 0.18 +0.5
1,233,628 - A4249_RS06065 0.18 +0.2
1,233,628 - A4249_RS06065 0.18 +0.7
1,233,628 - A4249_RS06065 0.18 +0.6
1,233,628 - A4249_RS06065 0.18 +0.6
1,233,628 - A4249_RS06065 0.18 +0.7
1,233,628 - A4249_RS06065 0.18 +0.2
1,233,628 - A4249_RS06065 0.18 -0.9
1,233,628 - A4249_RS06065 0.18 -1.9
1,233,629 + A4249_RS06065 0.18 -1.3
1,233,629 + A4249_RS06065 0.18 +1.6
1,233,629 + A4249_RS06065 0.18 -0.1
1,233,629 + A4249_RS06065 0.18 +1.5
1,233,629 + A4249_RS06065 0.18 -0.5
1,233,629 + A4249_RS06065 0.18 -1.0
1,233,629 + A4249_RS06065 0.18 -0.5
1,233,629 + A4249_RS06065 0.18 +0.8
1,233,629 + A4249_RS06065 0.18 -0.6
1,233,629 + A4249_RS06065 0.18 +0.6
1,233,629 + A4249_RS06065 0.18 +0.4
1,233,629 + A4249_RS06065 0.18 -0.4
1,233,629 + A4249_RS06065 0.18 +0.2
1,233,629 + A4249_RS06065 0.18 -0.2
1,233,629 + A4249_RS06065 0.18 -1.7
1,233,630 - A4249_RS06065 0.18 -1.1
1,233,630 - A4249_RS06065 0.18 -0.8
1,233,630 - A4249_RS06065 0.18 +2.0
1,233,630 - A4249_RS06065 0.18 +0.5
1,233,630 - A4249_RS06065 0.18 -0.3
1,233,630 - A4249_RS06065 0.18 +0.8
1,233,630 - A4249_RS06065 0.18 -0.3
1,233,630 - A4249_RS06065 0.18 +0.1
1,233,630 - A4249_RS06065 0.18 -0.0
1,233,633 + A4249_RS06065 0.19 -0.8
1,233,633 + A4249_RS06065 0.19 -1.3
1,233,633 + A4249_RS06065 0.19 -0.7
1,233,634 - A4249_RS06065 0.19 -0.1
1,233,634 - A4249_RS06065 0.19 -0.5
1,233,634 - A4249_RS06065 0.19 -0.7
1,233,634 - A4249_RS06065 0.19 -0.6
1,233,634 - A4249_RS06065 0.19 -0.5
1,233,805 + A4249_RS06065 0.54 -0.4
1,233,911 + A4249_RS06065 0.75 +0.1
1,233,912 - A4249_RS06065 0.76 -0.3
1,233,912 - A4249_RS06065 0.76 +1.5
1,233,912 - A4249_RS06065 0.76 +0.1
1,234,029 + +0.5
1,234,029 + +0.5
1,234,029 + -0.0
1,234,030 - -0.3
1,234,030 - -0.8
1,234,030 - -0.7
1,234,111 + -0.9
1,234,112 - -0.9
1,234,112 - +0.9
1,234,112 - -1.0
1,234,298 - A4249_RS06070 0.31 -0.1
1,234,298 - A4249_RS06070 0.31 -0.5
1,234,298 - A4249_RS06070 0.31 +0.7
1,234,298 - A4249_RS06070 0.31 -0.2
1,234,350 + A4249_RS06070 0.37 +0.6
1,234,350 + A4249_RS06070 0.37 -0.1
1,234,351 - A4249_RS06070 0.37 +0.0
1,234,424 + A4249_RS06070 0.45 +0.3
1,234,424 + A4249_RS06070 0.45 -0.0
1,234,424 + A4249_RS06070 0.45 -0.5
1,234,424 + A4249_RS06070 0.45 +0.9
1,234,424 + A4249_RS06070 0.45 +1.3
1,234,425 - A4249_RS06070 0.45 -0.6
1,234,425 - A4249_RS06070 0.45 -1.1
1,234,425 - A4249_RS06070 0.45 +0.4
1,234,425 - A4249_RS06070 0.45 -0.4
1,234,425 - A4249_RS06070 0.45 -1.0
1,234,425 - A4249_RS06070 0.45 +0.0
1,234,425 - A4249_RS06070 0.45 -0.3
1,234,425 - A4249_RS06070 0.45 +0.0
1,234,444 + A4249_RS06070 0.48 -0.5
1,234,444 + A4249_RS06070 0.48 -1.8
1,234,444 + A4249_RS06070 0.48 -0.3
1,234,444 + A4249_RS06070 0.48 -0.9
1,234,445 - A4249_RS06070 0.48 -0.4
1,234,445 - A4249_RS06070 0.48 -1.5
1,234,445 - A4249_RS06070 0.48 +1.7
1,234,619 + A4249_RS06070 0.68 +0.9
1,234,619 + A4249_RS06070 0.68 +1.1
1,234,619 + A4249_RS06070 0.68 -0.1
1,234,620 - A4249_RS06070 0.68 -0.7
1,234,620 - A4249_RS06070 0.68 -1.1
1,234,620 - A4249_RS06070 0.68 -0.4
1,234,802 + A4249_RS06070 0.89 -0.8
1,234,802 + A4249_RS06070 0.89 -0.2
1,234,802 + A4249_RS06070 0.89 +2.0
1,234,802 + A4249_RS06070 0.89 -0.8
1,234,802 + A4249_RS06070 0.89 +0.6
1,234,803 - A4249_RS06070 0.89 -0.6
1,234,964 - -0.3

Or see this region's nucleotide sequence