Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05665

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05650 and A4249_RS05655 are separated by 110 nucleotidesA4249_RS05655 and A4249_RS05660 are separated by 23 nucleotidesA4249_RS05660 and A4249_RS05665 overlap by 4 nucleotidesA4249_RS05665 and A4249_RS05670 are separated by 99 nucleotides A4249_RS05650: A4249_RS05650 - ribonuclease HI, at 1,157,343 to 1,157,795 _RS05650 A4249_RS05655: A4249_RS05655 - twin-arginine translocase TatA/TatE family subunit, at 1,157,906 to 1,158,124 _RS05655 A4249_RS05660: A4249_RS05660 - Sec-independent protein translocase protein TatB, at 1,158,148 to 1,158,726 _RS05660 A4249_RS05665: A4249_RS05665 - twin-arginine translocase subunit TatC, at 1,158,723 to 1,159,613 _RS05665 A4249_RS05670: A4249_RS05670 - type I glutamate--ammonia ligase, at 1,159,713 to 1,161,119 _RS05670 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.809 kb on + strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.810 kb on - strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.844 kb on + strandat 1157.846 kb on + strandat 1157.846 kb on + strandat 1157.846 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strandat 1158.135 kb on + strandat 1159.642 kb on + strandat 1159.642 kb on + strandat 1159.642 kb on + strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.643 kb on - strandat 1159.698 kb on - strandat 1159.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,157,809 + +0.0
1,157,809 + -0.7
1,157,809 + -1.0
1,157,809 + -1.2
1,157,809 + -0.1
1,157,810 - +0.0
1,157,810 - -1.4
1,157,810 - -0.3
1,157,810 - -1.2
1,157,810 - -0.1
1,157,844 + +1.4
1,157,844 + +0.4
1,157,844 + -0.8
1,157,844 + +0.2
1,157,846 + -1.4
1,157,846 + +0.4
1,157,846 + +2.0
1,158,135 + +0.1
1,158,135 + +0.4
1,158,135 + -0.2
1,158,135 + -1.3
1,159,642 + +0.7
1,159,642 + -0.8
1,159,642 + +0.8
1,159,643 - -1.1
1,159,643 - +0.1
1,159,643 - +0.7
1,159,643 - +2.0
1,159,698 - -2.2
1,159,698 - +0.6

Or see this region's nucleotide sequence