Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05625

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05620 and A4249_RS05625 are separated by 8 nucleotidesA4249_RS05625 and A4249_RS05630 overlap by 1 nucleotides A4249_RS05620: A4249_RS05620 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 1,150,834 to 1,152,288 _RS05620 A4249_RS05625: A4249_RS05625 - ADP-glyceromanno-heptose 6-epimerase, at 1,152,297 to 1,153,286 _RS05625 A4249_RS05630: A4249_RS05630 - DUF3089 domain-containing protein, at 1,153,286 to 1,154,377 _RS05630 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1151.643 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620at 1151.932 kb on + strand, within A4249_RS05620at 1152.162 kb on + strandat 1152.162 kb on + strandat 1152.162 kb on + strandat 1152.163 kb on - strandat 1152.163 kb on - strandat 1152.369 kb on + strandat 1152.369 kb on + strandat 1152.369 kb on + strandat 1152.369 kb on + strandat 1152.518 kb on + strand, within A4249_RS05625at 1152.518 kb on + strand, within A4249_RS05625at 1152.518 kb on + strand, within A4249_RS05625at 1152.518 kb on + strand, within A4249_RS05625at 1152.518 kb on + strand, within A4249_RS05625at 1152.518 kb on + strand, within A4249_RS05625at 1152.595 kb on + strand, within A4249_RS05625at 1152.596 kb on - strand, within A4249_RS05625at 1152.596 kb on - strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.633 kb on + strand, within A4249_RS05625at 1152.654 kb on + strand, within A4249_RS05625at 1152.654 kb on + strand, within A4249_RS05625at 1152.654 kb on + strand, within A4249_RS05625at 1152.654 kb on + strand, within A4249_RS05625at 1152.703 kb on + strand, within A4249_RS05625at 1152.703 kb on + strand, within A4249_RS05625at 1152.703 kb on + strand, within A4249_RS05625at 1152.759 kb on + strand, within A4249_RS05625at 1152.848 kb on + strand, within A4249_RS05625at 1152.848 kb on + strand, within A4249_RS05625at 1152.849 kb on - strand, within A4249_RS05625at 1152.939 kb on + strand, within A4249_RS05625at 1152.939 kb on + strand, within A4249_RS05625at 1152.939 kb on + strand, within A4249_RS05625at 1152.972 kb on + strand, within A4249_RS05625at 1152.972 kb on + strand, within A4249_RS05625at 1152.972 kb on + strand, within A4249_RS05625at 1152.972 kb on + strand, within A4249_RS05625at 1153.122 kb on + strand, within A4249_RS05625at 1153.122 kb on + strand, within A4249_RS05625at 1153.161 kb on + strand, within A4249_RS05625at 1153.161 kb on + strand, within A4249_RS05625at 1153.161 kb on + strand, within A4249_RS05625at 1153.161 kb on + strand, within A4249_RS05625at 1153.246 kb on - strandat 1153.319 kb on + strandat 1153.421 kb on + strand, within A4249_RS05630at 1153.421 kb on + strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.422 kb on - strand, within A4249_RS05630at 1153.445 kb on + strand, within A4249_RS05630at 1153.504 kb on - strand, within A4249_RS05630at 1153.504 kb on - strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.580 kb on + strand, within A4249_RS05630at 1153.581 kb on - strand, within A4249_RS05630at 1153.581 kb on - strand, within A4249_RS05630at 1153.581 kb on - strand, within A4249_RS05630at 1153.581 kb on - strand, within A4249_RS05630at 1153.581 kb on - strand, within A4249_RS05630at 1153.582 kb on + strand, within A4249_RS05630at 1153.582 kb on + strand, within A4249_RS05630at 1153.582 kb on + strand, within A4249_RS05630at 1153.582 kb on + strand, within A4249_RS05630at 1153.582 kb on + strand, within A4249_RS05630at 1153.583 kb on - strand, within A4249_RS05630at 1153.583 kb on - strand, within A4249_RS05630at 1153.583 kb on - strand, within A4249_RS05630at 1153.583 kb on - strand, within A4249_RS05630at 1153.583 kb on - strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.607 kb on + strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.608 kb on - strand, within A4249_RS05630at 1153.670 kb on + strand, within A4249_RS05630at 1153.670 kb on + strand, within A4249_RS05630at 1153.670 kb on + strand, within A4249_RS05630at 1153.670 kb on + strand, within A4249_RS05630at 1153.670 kb on + strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.671 kb on - strand, within A4249_RS05630at 1153.672 kb on + strand, within A4249_RS05630at 1153.672 kb on + strand, within A4249_RS05630at 1153.672 kb on + strand, within A4249_RS05630at 1153.672 kb on + strand, within A4249_RS05630at 1153.673 kb on - strand, within A4249_RS05630at 1153.673 kb on - strand, within A4249_RS05630at 1153.722 kb on - strand, within A4249_RS05630at 1153.755 kb on + strand, within A4249_RS05630at 1153.755 kb on + strand, within A4249_RS05630at 1153.755 kb on + strand, within A4249_RS05630at 1153.755 kb on + strand, within A4249_RS05630at 1153.756 kb on - strand, within A4249_RS05630at 1153.756 kb on - strand, within A4249_RS05630at 1153.783 kb on + strand, within A4249_RS05630at 1153.880 kb on + strand, within A4249_RS05630at 1153.880 kb on + strand, within A4249_RS05630at 1153.881 kb on - strand, within A4249_RS05630at 1153.881 kb on - strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.960 kb on + strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1153.961 kb on - strand, within A4249_RS05630at 1154.233 kb on + strand, within A4249_RS05630at 1154.233 kb on + strand, within A4249_RS05630at 1154.234 kb on - strand, within A4249_RS05630at 1154.234 kb on - strand, within A4249_RS05630at 1154.234 kb on - strand, within A4249_RS05630

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,151,643 + A4249_RS05620 0.56 -1.3
1,151,757 + A4249_RS05620 0.63 -1.9
1,151,757 + A4249_RS05620 0.63 -1.5
1,151,757 + A4249_RS05620 0.63 -0.8
1,151,932 + A4249_RS05620 0.75 -0.9
1,152,162 + -0.4
1,152,162 + +0.2
1,152,162 + +0.7
1,152,163 - +3.0
1,152,163 - +3.0
1,152,369 + -0.9
1,152,369 + -0.9
1,152,369 + -1.1
1,152,369 + -0.2
1,152,518 + A4249_RS05625 0.22 -0.5
1,152,518 + A4249_RS05625 0.22 -1.0
1,152,518 + A4249_RS05625 0.22 -0.7
1,152,518 + A4249_RS05625 0.22 -1.1
1,152,518 + A4249_RS05625 0.22 -0.5
1,152,518 + A4249_RS05625 0.22 -0.8
1,152,595 + A4249_RS05625 0.30 -0.7
1,152,596 - A4249_RS05625 0.30 -1.7
1,152,596 - A4249_RS05625 0.30 -1.2
1,152,633 + A4249_RS05625 0.34 -0.8
1,152,633 + A4249_RS05625 0.34 -0.8
1,152,633 + A4249_RS05625 0.34 -0.9
1,152,633 + A4249_RS05625 0.34 -0.9
1,152,633 + A4249_RS05625 0.34 -0.9
1,152,633 + A4249_RS05625 0.34 -2.0
1,152,633 + A4249_RS05625 0.34 -0.8
1,152,633 + A4249_RS05625 0.34 -0.5
1,152,633 + A4249_RS05625 0.34 -0.5
1,152,654 + A4249_RS05625 0.36 -2.7
1,152,654 + A4249_RS05625 0.36 -0.7
1,152,654 + A4249_RS05625 0.36 -0.5
1,152,654 + A4249_RS05625 0.36 -0.7
1,152,703 + A4249_RS05625 0.41 -1.5
1,152,703 + A4249_RS05625 0.41 -0.6
1,152,703 + A4249_RS05625 0.41 -0.8
1,152,759 + A4249_RS05625 0.47 -0.6
1,152,848 + A4249_RS05625 0.56 -0.1
1,152,848 + A4249_RS05625 0.56 -0.6
1,152,849 - A4249_RS05625 0.56 +1.5
1,152,939 + A4249_RS05625 0.65 -0.8
1,152,939 + A4249_RS05625 0.65 -0.7
1,152,939 + A4249_RS05625 0.65 -0.7
1,152,972 + A4249_RS05625 0.68 -0.2
1,152,972 + A4249_RS05625 0.68 -0.7
1,152,972 + A4249_RS05625 0.68 +0.7
1,152,972 + A4249_RS05625 0.68 -0.8
1,153,122 + A4249_RS05625 0.83 -1.6
1,153,122 + A4249_RS05625 0.83 -2.3
1,153,161 + A4249_RS05625 0.87 -0.9
1,153,161 + A4249_RS05625 0.87 -1.3
1,153,161 + A4249_RS05625 0.87 +0.5
1,153,161 + A4249_RS05625 0.87 -0.3
1,153,246 - +2.0
1,153,319 + +0.5
1,153,421 + A4249_RS05630 0.12 +0.2
1,153,421 + A4249_RS05630 0.12 -0.6
1,153,422 - A4249_RS05630 0.12 -0.3
1,153,422 - A4249_RS05630 0.12 -0.5
1,153,422 - A4249_RS05630 0.12 -0.0
1,153,422 - A4249_RS05630 0.12 -0.5
1,153,422 - A4249_RS05630 0.12 +0.1
1,153,422 - A4249_RS05630 0.12 -0.1
1,153,445 + A4249_RS05630 0.15 -0.9
1,153,504 - A4249_RS05630 0.20 -0.1
1,153,504 - A4249_RS05630 0.20 +0.1
1,153,580 + A4249_RS05630 0.27 -0.6
1,153,580 + A4249_RS05630 0.27 -0.9
1,153,580 + A4249_RS05630 0.27 -0.1
1,153,580 + A4249_RS05630 0.27 -1.3
1,153,580 + A4249_RS05630 0.27 -0.5
1,153,580 + A4249_RS05630 0.27 +0.0
1,153,580 + A4249_RS05630 0.27 +0.2
1,153,580 + A4249_RS05630 0.27 +0.5
1,153,580 + A4249_RS05630 0.27 -0.8
1,153,580 + A4249_RS05630 0.27 -0.5
1,153,580 + A4249_RS05630 0.27 -0.5
1,153,581 - A4249_RS05630 0.27 -0.2
1,153,581 - A4249_RS05630 0.27 -0.2
1,153,581 - A4249_RS05630 0.27 -0.2
1,153,581 - A4249_RS05630 0.27 -0.1
1,153,581 - A4249_RS05630 0.27 -0.1
1,153,582 + A4249_RS05630 0.27 -0.8
1,153,582 + A4249_RS05630 0.27 -0.5
1,153,582 + A4249_RS05630 0.27 -0.2
1,153,582 + A4249_RS05630 0.27 -0.1
1,153,582 + A4249_RS05630 0.27 -0.3
1,153,583 - A4249_RS05630 0.27 -0.1
1,153,583 - A4249_RS05630 0.27 -0.0
1,153,583 - A4249_RS05630 0.27 -0.5
1,153,583 - A4249_RS05630 0.27 -1.7
1,153,583 - A4249_RS05630 0.27 +0.5
1,153,607 + A4249_RS05630 0.29 +0.2
1,153,607 + A4249_RS05630 0.29 -0.5
1,153,607 + A4249_RS05630 0.29 -0.1
1,153,607 + A4249_RS05630 0.29 -0.6
1,153,607 + A4249_RS05630 0.29 +0.3
1,153,607 + A4249_RS05630 0.29 +0.3
1,153,607 + A4249_RS05630 0.29 +0.4
1,153,607 + A4249_RS05630 0.29 -0.5
1,153,607 + A4249_RS05630 0.29 -0.4
1,153,607 + A4249_RS05630 0.29 -0.6
1,153,607 + A4249_RS05630 0.29 -0.4
1,153,607 + A4249_RS05630 0.29 -0.2
1,153,607 + A4249_RS05630 0.29 -0.4
1,153,607 + A4249_RS05630 0.29 +0.3
1,153,607 + A4249_RS05630 0.29 +0.6
1,153,607 + A4249_RS05630 0.29 -0.1
1,153,607 + A4249_RS05630 0.29 -0.4
1,153,608 - A4249_RS05630 0.29 -0.4
1,153,608 - A4249_RS05630 0.29 +0.0
1,153,608 - A4249_RS05630 0.29 +0.6
1,153,608 - A4249_RS05630 0.29 +0.9
1,153,608 - A4249_RS05630 0.29 -0.2
1,153,608 - A4249_RS05630 0.29 -0.8
1,153,608 - A4249_RS05630 0.29 -0.1
1,153,608 - A4249_RS05630 0.29 +0.0
1,153,670 + A4249_RS05630 0.35 -0.7
1,153,670 + A4249_RS05630 0.35 -0.9
1,153,670 + A4249_RS05630 0.35 +0.3
1,153,670 + A4249_RS05630 0.35 -0.7
1,153,670 + A4249_RS05630 0.35 -0.4
1,153,671 - A4249_RS05630 0.35 -0.5
1,153,671 - A4249_RS05630 0.35 -0.2
1,153,671 - A4249_RS05630 0.35 +0.1
1,153,671 - A4249_RS05630 0.35 -0.3
1,153,671 - A4249_RS05630 0.35 -0.2
1,153,671 - A4249_RS05630 0.35 -0.7
1,153,671 - A4249_RS05630 0.35 -0.6
1,153,671 - A4249_RS05630 0.35 -0.1
1,153,671 - A4249_RS05630 0.35 -1.4
1,153,672 + A4249_RS05630 0.35 -0.4
1,153,672 + A4249_RS05630 0.35 +0.1
1,153,672 + A4249_RS05630 0.35 +0.4
1,153,672 + A4249_RS05630 0.35 -0.9
1,153,673 - A4249_RS05630 0.35 -0.6
1,153,673 - A4249_RS05630 0.35 -0.4
1,153,722 - A4249_RS05630 0.40 -1.0
1,153,755 + A4249_RS05630 0.43 -0.9
1,153,755 + A4249_RS05630 0.43 -1.5
1,153,755 + A4249_RS05630 0.43 -0.1
1,153,755 + A4249_RS05630 0.43 -0.6
1,153,756 - A4249_RS05630 0.43 +0.3
1,153,756 - A4249_RS05630 0.43 -0.1
1,153,783 + A4249_RS05630 0.46 -0.3
1,153,880 + A4249_RS05630 0.54 -2.0
1,153,880 + A4249_RS05630 0.54 -0.2
1,153,881 - A4249_RS05630 0.54 -0.4
1,153,881 - A4249_RS05630 0.54 +0.3
1,153,960 + A4249_RS05630 0.62 -0.3
1,153,960 + A4249_RS05630 0.62 +0.0
1,153,960 + A4249_RS05630 0.62 -0.1
1,153,960 + A4249_RS05630 0.62 -0.7
1,153,960 + A4249_RS05630 0.62 +0.7
1,153,960 + A4249_RS05630 0.62 -0.4
1,153,960 + A4249_RS05630 0.62 -1.6
1,153,960 + A4249_RS05630 0.62 -0.6
1,153,960 + A4249_RS05630 0.62 +0.8
1,153,960 + A4249_RS05630 0.62 -0.3
1,153,960 + A4249_RS05630 0.62 +0.2
1,153,960 + A4249_RS05630 0.62 -0.6
1,153,960 + A4249_RS05630 0.62 -0.4
1,153,960 + A4249_RS05630 0.62 -0.2
1,153,961 - A4249_RS05630 0.62 -0.1
1,153,961 - A4249_RS05630 0.62 -1.0
1,153,961 - A4249_RS05630 0.62 +0.0
1,153,961 - A4249_RS05630 0.62 +0.1
1,153,961 - A4249_RS05630 0.62 -0.7
1,153,961 - A4249_RS05630 0.62 -0.6
1,153,961 - A4249_RS05630 0.62 -0.3
1,154,233 + A4249_RS05630 0.87 -0.6
1,154,233 + A4249_RS05630 0.87 +0.0
1,154,234 - A4249_RS05630 0.87 -0.0
1,154,234 - A4249_RS05630 0.87 -0.8
1,154,234 - A4249_RS05630 0.87 -0.9

Or see this region's nucleotide sequence