Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS05485 and A4249_RS05490 overlap by 4 nucleotides A4249_RS05490 and A4249_RS05495 overlap by 2 nucleotides A4249_RS05495 and A4249_RS05500 are separated by 84 nucleotides A4249_RS05500 and A4249_RS05505 are separated by 134 nucleotides
A4249_RS05485: A4249_RS05485 - uracil-DNA glycosylase, at 1,121,497 to 1,122,135
_RS05485
A4249_RS05490: A4249_RS05490 - NYN domain-containing protein, at 1,122,132 to 1,122,668
_RS05490
A4249_RS05495: A4249_RS05495 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,122,667 to 1,123,230
_RS05495
A4249_RS05500: A4249_RS05500 - DNA-directed RNA polymerase subunit omega, at 1,123,315 to 1,123,674
_RS05500
A4249_RS05505: A4249_RS05505 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 1,123,809 to 1,125,968
_RS05505
Position (kb) 1122
1123
1124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1121.873 kb on + strand, within A4249_RS05485 at 1121.907 kb on + strand, within A4249_RS05485 at 1121.913 kb on - strand, within A4249_RS05485 at 1121.913 kb on - strand, within A4249_RS05485 at 1121.913 kb on - strand, within A4249_RS05485 at 1122.077 kb on + strand at 1122.221 kb on + strand, within A4249_RS05490 at 1122.410 kb on + strand, within A4249_RS05490 at 1122.411 kb on - strand, within A4249_RS05490 at 1122.460 kb on + strand, within A4249_RS05490 at 1122.461 kb on - strand, within A4249_RS05490 at 1122.461 kb on - strand, within A4249_RS05490 at 1122.521 kb on + strand, within A4249_RS05490 at 1122.521 kb on + strand, within A4249_RS05490 at 1122.521 kb on + strand, within A4249_RS05490 at 1122.521 kb on + strand, within A4249_RS05490 at 1122.521 kb on + strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.522 kb on - strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.523 kb on + strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.524 kb on - strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.526 kb on + strand, within A4249_RS05490 at 1122.527 kb on - strand, within A4249_RS05490 at 1122.527 kb on - strand, within A4249_RS05490 at 1122.527 kb on - strand, within A4249_RS05490 at 1122.527 kb on - strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.529 kb on + strand, within A4249_RS05490 at 1122.530 kb on - strand, within A4249_RS05490 at 1122.530 kb on - strand, within A4249_RS05490 at 1122.530 kb on - strand, within A4249_RS05490 at 1122.530 kb on - strand, within A4249_RS05490 at 1122.617 kb on - strand at 1123.700 kb on + strand at 1123.848 kb on + strand at 1123.848 kb on + strand at 1123.848 kb on + strand at 1123.848 kb on + strand at 1123.887 kb on + strand at 1123.887 kb on + strand at 1123.887 kb on + strand at 1123.887 kb on + strand at 1123.887 kb on + strand at 1123.887 kb on + strand at 1123.893 kb on + strand at 1123.893 kb on + strand at 1123.893 kb on + strand at 1123.893 kb on + strand at 1123.894 kb on - strand at 1123.983 kb on + strand at 1123.983 kb on + strand at 1123.985 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 1,121,873 + A4249_RS05485 0.59 +0.5 1,121,907 + A4249_RS05485 0.64 +0.2 1,121,913 - A4249_RS05485 0.65 -0.8 1,121,913 - A4249_RS05485 0.65 +1.1 1,121,913 - A4249_RS05485 0.65 +1.0 1,122,077 + -1.0 1,122,221 + A4249_RS05490 0.17 -0.5 1,122,410 + A4249_RS05490 0.52 +0.2 1,122,411 - A4249_RS05490 0.52 +0.1 1,122,460 + A4249_RS05490 0.61 -0.3 1,122,461 - A4249_RS05490 0.61 +1.8 1,122,461 - A4249_RS05490 0.61 -0.6 1,122,521 + A4249_RS05490 0.72 -0.1 1,122,521 + A4249_RS05490 0.72 +0.1 1,122,521 + A4249_RS05490 0.72 -0.4 1,122,521 + A4249_RS05490 0.72 -1.0 1,122,521 + A4249_RS05490 0.72 +2.4 1,122,522 - A4249_RS05490 0.73 +0.1 1,122,522 - A4249_RS05490 0.73 +1.2 1,122,522 - A4249_RS05490 0.73 -1.2 1,122,522 - A4249_RS05490 0.73 -0.7 1,122,522 - A4249_RS05490 0.73 +0.0 1,122,522 - A4249_RS05490 0.73 +0.9 1,122,523 + A4249_RS05490 0.73 -0.2 1,122,523 + A4249_RS05490 0.73 -0.9 1,122,523 + A4249_RS05490 0.73 -0.2 1,122,523 + A4249_RS05490 0.73 +0.0 1,122,523 + A4249_RS05490 0.73 -0.3 1,122,523 + A4249_RS05490 0.73 -0.4 1,122,523 + A4249_RS05490 0.73 +1.6 1,122,523 + A4249_RS05490 0.73 -1.3 1,122,523 + A4249_RS05490 0.73 -0.4 1,122,523 + A4249_RS05490 0.73 -0.4 1,122,523 + A4249_RS05490 0.73 +1.2 1,122,523 + A4249_RS05490 0.73 -0.7 1,122,524 - A4249_RS05490 0.73 +1.1 1,122,524 - A4249_RS05490 0.73 -0.7 1,122,524 - A4249_RS05490 0.73 -0.8 1,122,524 - A4249_RS05490 0.73 +0.5 1,122,524 - A4249_RS05490 0.73 +0.8 1,122,524 - A4249_RS05490 0.73 +0.6 1,122,526 + A4249_RS05490 0.73 +0.7 1,122,526 + A4249_RS05490 0.73 -1.1 1,122,526 + A4249_RS05490 0.73 +0.4 1,122,526 + A4249_RS05490 0.73 -0.4 1,122,526 + A4249_RS05490 0.73 +0.6 1,122,526 + A4249_RS05490 0.73 +1.0 1,122,526 + A4249_RS05490 0.73 -0.2 1,122,526 + A4249_RS05490 0.73 +1.0 1,122,527 - A4249_RS05490 0.74 +0.5 1,122,527 - A4249_RS05490 0.74 +0.1 1,122,527 - A4249_RS05490 0.74 +0.7 1,122,527 - A4249_RS05490 0.74 +2.2 1,122,529 + A4249_RS05490 0.74 +0.3 1,122,529 + A4249_RS05490 0.74 -1.1 1,122,529 + A4249_RS05490 0.74 +1.2 1,122,529 + A4249_RS05490 0.74 -0.5 1,122,529 + A4249_RS05490 0.74 -0.2 1,122,529 + A4249_RS05490 0.74 +0.6 1,122,529 + A4249_RS05490 0.74 +1.2 1,122,529 + A4249_RS05490 0.74 -0.6 1,122,529 + A4249_RS05490 0.74 -0.0 1,122,530 - A4249_RS05490 0.74 +0.9 1,122,530 - A4249_RS05490 0.74 +1.2 1,122,530 - A4249_RS05490 0.74 +0.0 1,122,530 - A4249_RS05490 0.74 -0.1 1,122,617 - -0.1 1,123,700 + -0.6 1,123,848 + -1.3 1,123,848 + -0.1 1,123,848 + -1.2 1,123,848 + +1.2 1,123,887 + +1.0 1,123,887 + +0.8 1,123,887 + -0.1 1,123,887 + -0.1 1,123,887 + -1.8 1,123,887 + +0.2 1,123,893 + -0.0 1,123,893 + +0.6 1,123,893 + -0.7 1,123,893 + +0.9 1,123,894 - -0.7 1,123,983 + +0.2 1,123,983 + -0.9 1,123,985 + +0.4
Or see this region's nucleotide sequence