Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05480

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05475 and A4249_RS05480 overlap by 1 nucleotidesA4249_RS05480 and A4249_RS05485 are separated by 3 nucleotidesA4249_RS05485 and A4249_RS05490 overlap by 4 nucleotides A4249_RS05475: A4249_RS05475 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,120,136 to 1,121,020 _RS05475 A4249_RS05480: A4249_RS05480 - SsrA-binding protein SmpB, at 1,121,020 to 1,121,493 _RS05480 A4249_RS05485: A4249_RS05485 - uracil-DNA glycosylase, at 1,121,497 to 1,122,135 _RS05485 A4249_RS05490: A4249_RS05490 - NYN domain-containing protein, at 1,122,132 to 1,122,668 _RS05490 Position (kb) 1121 1122Strain fitness (log2 ratio) -1 0 1 2at 1120.062 kb on + strandat 1120.063 kb on - strandat 1120.063 kb on - strandat 1120.063 kb on - strandat 1120.129 kb on + strandat 1120.129 kb on + strandat 1120.129 kb on + strandat 1120.129 kb on + strandat 1121.591 kb on + strand, within A4249_RS05485at 1121.592 kb on - strand, within A4249_RS05485at 1121.592 kb on - strand, within A4249_RS05485at 1121.609 kb on + strand, within A4249_RS05485at 1121.873 kb on + strand, within A4249_RS05485at 1121.907 kb on + strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1121.913 kb on - strand, within A4249_RS05485at 1122.077 kb on + strandat 1122.221 kb on + strand, within A4249_RS05490at 1122.410 kb on + strand, within A4249_RS05490at 1122.411 kb on - strand, within A4249_RS05490at 1122.460 kb on + strand, within A4249_RS05490at 1122.461 kb on - strand, within A4249_RS05490at 1122.461 kb on - strand, within A4249_RS05490

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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1,120,062 + +0.2
1,120,063 - +2.4
1,120,063 - -0.9
1,120,063 - -0.9
1,120,129 + +1.8
1,120,129 + -0.2
1,120,129 + +0.2
1,120,129 + -0.3
1,121,591 + A4249_RS05485 0.15 -0.1
1,121,592 - A4249_RS05485 0.15 +0.4
1,121,592 - A4249_RS05485 0.15 -0.3
1,121,609 + A4249_RS05485 0.18 +2.0
1,121,873 + A4249_RS05485 0.59 +0.5
1,121,907 + A4249_RS05485 0.64 +0.2
1,121,913 - A4249_RS05485 0.65 -0.8
1,121,913 - A4249_RS05485 0.65 +1.1
1,121,913 - A4249_RS05485 0.65 +1.0
1,122,077 + -1.0
1,122,221 + A4249_RS05490 0.17 -0.5
1,122,410 + A4249_RS05490 0.52 +0.2
1,122,411 - A4249_RS05490 0.52 +0.1
1,122,460 + A4249_RS05490 0.61 -0.3
1,122,461 - A4249_RS05490 0.61 +1.8
1,122,461 - A4249_RS05490 0.61 -0.6

Or see this region's nucleotide sequence