Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04785 and A4249_RS04790 overlap by 44 nucleotides A4249_RS04790 and A4249_RS04795 overlap by 4 nucleotides A4249_RS04795 and A4249_RS04800 are separated by 40 nucleotides A4249_RS04800 and A4249_RS04805 overlap by 4 nucleotides
A4249_RS04785: A4249_RS04785 - YihY/virulence factor BrkB family protein, at 996,697 to 997,641
_RS04785
A4249_RS04790: A4249_RS04790 - sulfurtransferase TusA family protein, at 997,598 to 997,849
_RS04790
A4249_RS04795: A4249_RS04795 - CinA family protein, at 997,846 to 998,334
_RS04795
A4249_RS04800: A4249_RS04800 - fused MFS/spermidine synthase, at 998,375 to 1,000,663
_RS04800
A4249_RS04805: A4249_RS04805 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,000,660 to 1,001,811
_RS04805
Position (kb) 998
999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.420 kb on + strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.421 kb on - strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.453 kb on + strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.454 kb on - strand, within A4249_RS04785 at 997.519 kb on + strand, within A4249_RS04785 at 997.520 kb on - strand, within A4249_RS04785 at 997.520 kb on - strand, within A4249_RS04785 at 997.639 kb on + strand at 997.639 kb on + strand at 997.640 kb on - strand at 997.640 kb on - strand at 997.640 kb on - strand at 997.640 kb on - strand at 997.640 kb on - strand at 997.700 kb on + strand, within A4249_RS04790 at 997.700 kb on + strand, within A4249_RS04790 at 997.700 kb on + strand, within A4249_RS04790 at 997.701 kb on - strand, within A4249_RS04790 at 997.701 kb on - strand, within A4249_RS04790 at 997.829 kb on + strand at 997.830 kb on - strand at 997.830 kb on - strand at 997.830 kb on - strand at 997.830 kb on - strand at 997.830 kb on - strand at 997.830 kb on - strand at 997.830 kb on - strand at 998.029 kb on + strand, within A4249_RS04795 at 998.030 kb on - strand, within A4249_RS04795 at 998.168 kb on + strand, within A4249_RS04795 at 998.168 kb on + strand, within A4249_RS04795 at 998.168 kb on + strand, within A4249_RS04795 at 998.168 kb on + strand, within A4249_RS04795 at 998.168 kb on + strand, within A4249_RS04795 at 998.169 kb on - strand, within A4249_RS04795 at 998.169 kb on - strand, within A4249_RS04795 at 998.169 kb on - strand, within A4249_RS04795 at 998.169 kb on - strand, within A4249_RS04795 at 998.319 kb on + strand at 998.319 kb on + strand at 998.319 kb on + strand at 998.320 kb on - strand at 998.320 kb on - strand at 998.320 kb on - strand at 998.320 kb on - strand at 998.320 kb on - strand at 998.345 kb on + strand at 998.387 kb on - strand at 998.397 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.458 kb on + strand at 998.459 kb on - strand at 998.459 kb on - strand at 998.459 kb on - strand at 998.591 kb on + strand at 998.592 kb on - strand at 998.813 kb on + strand, within A4249_RS04800 at 998.814 kb on - strand, within A4249_RS04800 at 998.814 kb on - strand, within A4249_RS04800 at 998.814 kb on - strand, within A4249_RS04800 at 998.814 kb on - strand, within A4249_RS04800 at 998.855 kb on + strand, within A4249_RS04800 at 998.856 kb on - strand, within A4249_RS04800 at 998.856 kb on - strand, within A4249_RS04800 at 998.856 kb on - strand, within A4249_RS04800 at 998.864 kb on + strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 998.865 kb on - strand, within A4249_RS04800 at 999.203 kb on + strand, within A4249_RS04800 at 999.203 kb on + strand, within A4249_RS04800 at 999.203 kb on + strand, within A4249_RS04800 at 999.434 kb on + strand, within A4249_RS04800 at 999.434 kb on + strand, within A4249_RS04800 at 999.459 kb on + strand, within A4249_RS04800 at 999.459 kb on + strand, within A4249_RS04800 at 999.519 kb on - strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.792 kb on + strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.793 kb on - strand, within A4249_RS04800 at 999.803 kb on + strand, within A4249_RS04800 at 999.821 kb on + strand, within A4249_RS04800 at 999.822 kb on - strand, within A4249_RS04800 at 999.874 kb on + strand, within A4249_RS04800 at 999.912 kb on + strand, within A4249_RS04800 at 999.912 kb on + strand, within A4249_RS04800 at 999.912 kb on + strand, within A4249_RS04800 at 999.913 kb on - strand, within A4249_RS04800 at 999.913 kb on - strand, within A4249_RS04800 at 999.913 kb on - strand, within A4249_RS04800 at 999.913 kb on - strand, within A4249_RS04800 at 999.980 kb on + strand, within A4249_RS04800 at 999.980 kb on + strand, within A4249_RS04800 at 999.980 kb on + strand, within A4249_RS04800 at 999.980 kb on + strand, within A4249_RS04800 at 999.981 kb on - strand, within A4249_RS04800 at 999.981 kb on - strand, within A4249_RS04800 at 999.981 kb on - strand, within A4249_RS04800 at 999.981 kb on - strand, within A4249_RS04800 at 999.981 kb on - strand, within A4249_RS04800 at 999.983 kb on + strand, within A4249_RS04800 at 999.983 kb on + strand, within A4249_RS04800 at 999.983 kb on + strand, within A4249_RS04800 at 999.983 kb on + strand, within A4249_RS04800 at 999.983 kb on + strand, within A4249_RS04800 at 999.984 kb on - strand, within A4249_RS04800 at 999.984 kb on - strand, within A4249_RS04800 at 999.984 kb on - strand, within A4249_RS04800 at 999.984 kb on - strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.091 kb on + strand, within A4249_RS04800 at 1000.092 kb on - strand, within A4249_RS04800 at 1000.092 kb on - strand, within A4249_RS04800 at 1000.092 kb on - strand, within A4249_RS04800 at 1000.092 kb on - strand, within A4249_RS04800 at 1000.092 kb on - strand, within A4249_RS04800 at 1000.259 kb on + strand, within A4249_RS04800 at 1000.259 kb on + strand, within A4249_RS04800 at 1000.259 kb on + strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.260 kb on - strand, within A4249_RS04800 at 1000.338 kb on - strand, within A4249_RS04800 at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.460 kb on + strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.461 kb on - strand at 1000.610 kb on + strand at 1000.610 kb on + strand at 1000.610 kb on + strand at 1000.611 kb on - strand at 1000.611 kb on - strand at 1000.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 997,420 + A4249_RS04785 0.77 -0.7 997,420 + A4249_RS04785 0.77 -1.4 997,420 + A4249_RS04785 0.77 +1.6 997,420 + A4249_RS04785 0.77 -1.8 997,420 + A4249_RS04785 0.77 -0.7 997,420 + A4249_RS04785 0.77 -0.5 997,420 + A4249_RS04785 0.77 -0.2 997,420 + A4249_RS04785 0.77 -0.3 997,420 + A4249_RS04785 0.77 +0.5 997,420 + A4249_RS04785 0.77 +1.3 997,420 + A4249_RS04785 0.77 -0.3 997,420 + A4249_RS04785 0.77 +1.1 997,420 + A4249_RS04785 0.77 -0.5 997,420 + A4249_RS04785 0.77 -0.1 997,421 - A4249_RS04785 0.77 -0.8 997,421 - A4249_RS04785 0.77 -0.3 997,421 - A4249_RS04785 0.77 +0.1 997,421 - A4249_RS04785 0.77 +1.0 997,421 - A4249_RS04785 0.77 +0.3 997,421 - A4249_RS04785 0.77 -1.7 997,421 - A4249_RS04785 0.77 +0.5 997,421 - A4249_RS04785 0.77 +1.0 997,421 - A4249_RS04785 0.77 +1.2 997,421 - A4249_RS04785 0.77 +1.5 997,421 - A4249_RS04785 0.77 +0.3 997,453 + A4249_RS04785 0.80 -0.5 997,453 + A4249_RS04785 0.80 -0.7 997,453 + A4249_RS04785 0.80 +1.0 997,453 + A4249_RS04785 0.80 -0.1 997,453 + A4249_RS04785 0.80 -0.6 997,453 + A4249_RS04785 0.80 -1.6 997,453 + A4249_RS04785 0.80 -0.8 997,453 + A4249_RS04785 0.80 +0.2 997,453 + A4249_RS04785 0.80 +1.2 997,454 - A4249_RS04785 0.80 +0.0 997,454 - A4249_RS04785 0.80 -1.4 997,454 - A4249_RS04785 0.80 -0.4 997,454 - A4249_RS04785 0.80 +0.0 997,454 - A4249_RS04785 0.80 -0.4 997,454 - A4249_RS04785 0.80 +0.0 997,519 + A4249_RS04785 0.87 +1.6 997,520 - A4249_RS04785 0.87 +1.0 997,520 - A4249_RS04785 0.87 -0.5 997,639 + +0.5 997,639 + +0.6 997,640 - +0.4 997,640 - +0.2 997,640 - +0.4 997,640 - -0.3 997,640 - -1.4 997,700 + A4249_RS04790 0.40 -0.4 997,700 + A4249_RS04790 0.40 +0.0 997,700 + A4249_RS04790 0.40 +0.9 997,701 - A4249_RS04790 0.41 -1.6 997,701 - A4249_RS04790 0.41 +0.3 997,829 + -0.5 997,830 - +0.0 997,830 - +1.7 997,830 - +0.4 997,830 - -0.6 997,830 - +1.6 997,830 - -1.9 997,830 - -1.3 998,029 + A4249_RS04795 0.37 -0.1 998,030 - A4249_RS04795 0.38 -1.2 998,168 + A4249_RS04795 0.66 +1.0 998,168 + A4249_RS04795 0.66 +0.6 998,168 + A4249_RS04795 0.66 +1.4 998,168 + A4249_RS04795 0.66 -0.4 998,168 + A4249_RS04795 0.66 -2.0 998,169 - A4249_RS04795 0.66 +0.9 998,169 - A4249_RS04795 0.66 -0.3 998,169 - A4249_RS04795 0.66 -0.2 998,169 - A4249_RS04795 0.66 -0.0 998,319 + -0.3 998,319 + -2.7 998,319 + -0.1 998,320 - -1.4 998,320 - +0.1 998,320 - -0.4 998,320 - -0.9 998,320 - -0.5 998,345 + +2.0 998,387 - +0.3 998,397 + +0.4 998,458 + +0.8 998,458 + -1.8 998,458 + -1.0 998,458 + -0.9 998,458 + +0.8 998,458 + +0.4 998,458 + +0.1 998,458 + +0.9 998,458 + +0.4 998,459 - -0.4 998,459 - +0.4 998,459 - +0.4 998,591 + -0.3 998,592 - -0.8 998,813 + A4249_RS04800 0.19 -0.5 998,814 - A4249_RS04800 0.19 -1.0 998,814 - A4249_RS04800 0.19 -1.1 998,814 - A4249_RS04800 0.19 +0.5 998,814 - A4249_RS04800 0.19 +0.3 998,855 + A4249_RS04800 0.21 +0.2 998,856 - A4249_RS04800 0.21 -0.1 998,856 - A4249_RS04800 0.21 -2.0 998,856 - A4249_RS04800 0.21 -0.5 998,864 + A4249_RS04800 0.21 +0.9 998,865 - A4249_RS04800 0.21 +0.2 998,865 - A4249_RS04800 0.21 -0.4 998,865 - A4249_RS04800 0.21 -0.4 998,865 - A4249_RS04800 0.21 +0.5 998,865 - A4249_RS04800 0.21 -1.0 998,865 - A4249_RS04800 0.21 +0.0 999,203 + A4249_RS04800 0.36 -0.3 999,203 + A4249_RS04800 0.36 +0.2 999,203 + A4249_RS04800 0.36 +0.0 999,434 + A4249_RS04800 0.46 +0.0 999,434 + A4249_RS04800 0.46 -0.2 999,459 + A4249_RS04800 0.47 -0.7 999,459 + A4249_RS04800 0.47 -0.1 999,519 - A4249_RS04800 0.50 -0.1 999,792 + A4249_RS04800 0.62 -1.2 999,792 + A4249_RS04800 0.62 -0.9 999,792 + A4249_RS04800 0.62 -0.2 999,792 + A4249_RS04800 0.62 -0.1 999,792 + A4249_RS04800 0.62 +0.0 999,792 + A4249_RS04800 0.62 -0.4 999,792 + A4249_RS04800 0.62 +0.3 999,792 + A4249_RS04800 0.62 +0.8 999,792 + A4249_RS04800 0.62 -1.4 999,793 - A4249_RS04800 0.62 -0.2 999,793 - A4249_RS04800 0.62 -0.8 999,793 - A4249_RS04800 0.62 -0.4 999,793 - A4249_RS04800 0.62 -0.6 999,793 - A4249_RS04800 0.62 +2.0 999,793 - A4249_RS04800 0.62 -0.9 999,793 - A4249_RS04800 0.62 -0.4 999,803 + A4249_RS04800 0.62 -0.2 999,821 + A4249_RS04800 0.63 -0.6 999,822 - A4249_RS04800 0.63 +0.1 999,874 + A4249_RS04800 0.65 -0.6 999,912 + A4249_RS04800 0.67 +1.1 999,912 + A4249_RS04800 0.67 -0.2 999,912 + A4249_RS04800 0.67 -0.3 999,913 - A4249_RS04800 0.67 -0.6 999,913 - A4249_RS04800 0.67 -0.0 999,913 - A4249_RS04800 0.67 +0.4 999,913 - A4249_RS04800 0.67 -0.1 999,980 + A4249_RS04800 0.70 -0.3 999,980 + A4249_RS04800 0.70 +0.7 999,980 + A4249_RS04800 0.70 -0.1 999,980 + A4249_RS04800 0.70 -0.1 999,981 - A4249_RS04800 0.70 +0.5 999,981 - A4249_RS04800 0.70 +0.1 999,981 - A4249_RS04800 0.70 -1.0 999,981 - A4249_RS04800 0.70 -0.5 999,981 - A4249_RS04800 0.70 -0.6 999,983 + A4249_RS04800 0.70 -2.2 999,983 + A4249_RS04800 0.70 +0.1 999,983 + A4249_RS04800 0.70 +0.9 999,983 + A4249_RS04800 0.70 -0.9 999,983 + A4249_RS04800 0.70 -0.2 999,984 - A4249_RS04800 0.70 +0.4 999,984 - A4249_RS04800 0.70 +1.7 999,984 - A4249_RS04800 0.70 -1.1 999,984 - A4249_RS04800 0.70 -1.1 1,000,091 + A4249_RS04800 0.75 -0.8 1,000,091 + A4249_RS04800 0.75 -1.7 1,000,091 + A4249_RS04800 0.75 -0.1 1,000,091 + A4249_RS04800 0.75 -1.5 1,000,091 + A4249_RS04800 0.75 -0.5 1,000,091 + A4249_RS04800 0.75 +0.5 1,000,092 - A4249_RS04800 0.75 +0.3 1,000,092 - A4249_RS04800 0.75 +0.3 1,000,092 - A4249_RS04800 0.75 -0.8 1,000,092 - A4249_RS04800 0.75 -0.5 1,000,092 - A4249_RS04800 0.75 +0.7 1,000,259 + A4249_RS04800 0.82 +0.1 1,000,259 + A4249_RS04800 0.82 -0.1 1,000,259 + A4249_RS04800 0.82 +0.1 1,000,260 - A4249_RS04800 0.82 +0.4 1,000,260 - A4249_RS04800 0.82 -0.4 1,000,260 - A4249_RS04800 0.82 -1.0 1,000,260 - A4249_RS04800 0.82 +0.9 1,000,260 - A4249_RS04800 0.82 +0.0 1,000,260 - A4249_RS04800 0.82 -1.0 1,000,338 - A4249_RS04800 0.86 -1.4 1,000,460 + +0.1 1,000,460 + -0.1 1,000,460 + +0.0 1,000,460 + -0.2 1,000,460 + +1.0 1,000,460 + -0.6 1,000,460 + +0.0 1,000,460 + +1.0 1,000,460 + -0.4 1,000,460 + +0.1 1,000,460 + -0.7 1,000,460 + +0.8 1,000,461 - +0.4 1,000,461 - -0.2 1,000,461 - +0.1 1,000,461 - +0.0 1,000,461 - -1.4 1,000,461 - +0.1 1,000,461 - -0.6 1,000,461 - -0.0 1,000,461 - -2.0 1,000,461 - -1.2 1,000,461 - -1.9 1,000,610 + -1.1 1,000,610 + +0.1 1,000,610 + +0.6 1,000,611 - -0.5 1,000,611 - -1.0 1,000,662 - +0.1
Or see this region's nucleotide sequence