Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04540

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04535 and A4249_RS04540 are separated by 107 nucleotidesA4249_RS04540 and A4249_RS04545 are separated by 142 nucleotides A4249_RS04535: A4249_RS04535 - DUF1343 domain-containing protein, at 941,687 to 942,889 _RS04535 A4249_RS04540: A4249_RS04540 - alkyl hydroperoxide reductase subunit C, at 942,997 to 943,560 _RS04540 A4249_RS04545: A4249_RS04545 - alkyl hydroperoxide reductase subunit F, at 943,703 to 945,292 _RS04545 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 942.035 kb on + strand, within A4249_RS04535at 942.036 kb on - strand, within A4249_RS04535at 942.036 kb on - strand, within A4249_RS04535at 942.041 kb on + strand, within A4249_RS04535at 942.041 kb on + strand, within A4249_RS04535at 942.041 kb on + strand, within A4249_RS04535at 942.041 kb on + strand, within A4249_RS04535at 942.041 kb on + strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.042 kb on - strand, within A4249_RS04535at 942.059 kb on + strand, within A4249_RS04535at 942.059 kb on + strand, within A4249_RS04535at 942.059 kb on + strand, within A4249_RS04535at 942.059 kb on + strand, within A4249_RS04535at 942.060 kb on - strand, within A4249_RS04535at 942.060 kb on - strand, within A4249_RS04535at 942.386 kb on + strand, within A4249_RS04535at 942.386 kb on + strand, within A4249_RS04535at 942.571 kb on + strand, within A4249_RS04535at 942.572 kb on - strand, within A4249_RS04535at 942.572 kb on - strand, within A4249_RS04535at 942.572 kb on - strand, within A4249_RS04535at 942.701 kb on + strand, within A4249_RS04535at 942.731 kb on + strand, within A4249_RS04535at 942.732 kb on - strand, within A4249_RS04535at 942.885 kb on - strandat 942.885 kb on - strandat 942.907 kb on + strandat 942.938 kb on + strandat 943.042 kb on + strandat 943.042 kb on + strandat 943.042 kb on + strandat 943.042 kb on + strandat 943.042 kb on + strandat 943.043 kb on - strandat 943.043 kb on - strandat 943.044 kb on + strandat 943.044 kb on + strandat 943.044 kb on + strandat 943.044 kb on + strandat 943.044 kb on + strandat 943.045 kb on - strandat 943.112 kb on - strand, within A4249_RS04540at 943.168 kb on + strand, within A4249_RS04540at 943.168 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.201 kb on + strand, within A4249_RS04540at 943.202 kb on - strand, within A4249_RS04540at 943.202 kb on - strand, within A4249_RS04540at 943.202 kb on - strand, within A4249_RS04540at 943.202 kb on - strand, within A4249_RS04540at 943.202 kb on - strand, within A4249_RS04540at 943.276 kb on + strand, within A4249_RS04540at 943.277 kb on - strand, within A4249_RS04540at 943.277 kb on - strand, within A4249_RS04540at 943.277 kb on - strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.465 kb on + strand, within A4249_RS04540at 943.466 kb on - strand, within A4249_RS04540at 943.466 kb on - strand, within A4249_RS04540at 943.466 kb on - strand, within A4249_RS04540at 943.466 kb on - strand, within A4249_RS04540at 943.558 kb on + strandat 943.558 kb on + strandat 943.558 kb on + strandat 943.558 kb on + strandat 943.559 kb on - strandat 943.559 kb on - strandat 943.559 kb on - strandat 943.559 kb on - strandat 943.569 kb on - strandat 943.636 kb on + strandat 943.636 kb on + strandat 943.636 kb on + strandat 943.636 kb on + strandat 943.637 kb on - strandat 943.707 kb on + strandat 943.707 kb on + strandat 943.707 kb on + strandat 943.707 kb on + strandat 943.707 kb on + strandat 943.708 kb on - strandat 943.871 kb on + strand, within A4249_RS04545at 943.871 kb on + strand, within A4249_RS04545at 943.872 kb on - strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.057 kb on + strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.058 kb on - strand, within A4249_RS04545at 944.072 kb on + strand, within A4249_RS04545at 944.072 kb on + strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.073 kb on - strand, within A4249_RS04545at 944.137 kb on + strand, within A4249_RS04545at 944.137 kb on + strand, within A4249_RS04545at 944.138 kb on - strand, within A4249_RS04545at 944.180 kb on - strand, within A4249_RS04545at 944.180 kb on - strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.390 kb on + strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.391 kb on - strand, within A4249_RS04545at 944.392 kb on + strand, within A4249_RS04545at 944.393 kb on - strand, within A4249_RS04545at 944.489 kb on + strand, within A4249_RS04545at 944.489 kb on + strand, within A4249_RS04545at 944.489 kb on + strand, within A4249_RS04545at 944.489 kb on + strand, within A4249_RS04545at 944.490 kb on - strand, within A4249_RS04545at 944.490 kb on - strand, within A4249_RS04545at 944.490 kb on - strand, within A4249_RS04545at 944.541 kb on - strand, within A4249_RS04545at 944.541 kb on - strand, within A4249_RS04545

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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942,035 + A4249_RS04535 0.29 +1.5
942,036 - A4249_RS04535 0.29 +0.0
942,036 - A4249_RS04535 0.29 +0.6
942,041 + A4249_RS04535 0.29 +0.5
942,041 + A4249_RS04535 0.29 +1.9
942,041 + A4249_RS04535 0.29 +0.5
942,041 + A4249_RS04535 0.29 +0.6
942,041 + A4249_RS04535 0.29 -1.9
942,042 - A4249_RS04535 0.30 +0.7
942,042 - A4249_RS04535 0.30 -0.2
942,042 - A4249_RS04535 0.30 +0.5
942,042 - A4249_RS04535 0.30 +0.2
942,042 - A4249_RS04535 0.30 -0.4
942,042 - A4249_RS04535 0.30 -0.4
942,042 - A4249_RS04535 0.30 +0.7
942,042 - A4249_RS04535 0.30 +0.6
942,042 - A4249_RS04535 0.30 +0.6
942,059 + A4249_RS04535 0.31 +1.3
942,059 + A4249_RS04535 0.31 +0.5
942,059 + A4249_RS04535 0.31 -0.3
942,059 + A4249_RS04535 0.31 +0.3
942,060 - A4249_RS04535 0.31 -0.5
942,060 - A4249_RS04535 0.31 -0.5
942,386 + A4249_RS04535 0.58 +1.0
942,386 + A4249_RS04535 0.58 +0.3
942,571 + A4249_RS04535 0.73 -0.1
942,572 - A4249_RS04535 0.74 -0.2
942,572 - A4249_RS04535 0.74 +1.5
942,572 - A4249_RS04535 0.74 -0.4
942,701 + A4249_RS04535 0.84 +0.5
942,731 + A4249_RS04535 0.87 +0.3
942,732 - A4249_RS04535 0.87 +0.3
942,885 - -1.0
942,885 - +0.2
942,907 + +0.2
942,938 + +0.4
943,042 + +0.3
943,042 + -0.8
943,042 + +0.4
943,042 + +0.9
943,042 + -1.6
943,043 - -0.1
943,043 - -0.4
943,044 + -0.1
943,044 + +1.7
943,044 + +0.7
943,044 + +1.2
943,044 + -0.3
943,045 - +0.6
943,112 - A4249_RS04540 0.20 +1.3
943,168 + A4249_RS04540 0.30 +0.9
943,168 + A4249_RS04540 0.30 +1.2
943,201 + A4249_RS04540 0.36 -0.3
943,201 + A4249_RS04540 0.36 +0.3
943,201 + A4249_RS04540 0.36 +2.8
943,201 + A4249_RS04540 0.36 -0.4
943,201 + A4249_RS04540 0.36 -1.1
943,201 + A4249_RS04540 0.36 +0.9
943,201 + A4249_RS04540 0.36 -0.7
943,202 - A4249_RS04540 0.36 -0.3
943,202 - A4249_RS04540 0.36 -0.4
943,202 - A4249_RS04540 0.36 -0.9
943,202 - A4249_RS04540 0.36 +0.4
943,202 - A4249_RS04540 0.36 +1.4
943,276 + A4249_RS04540 0.49 +0.0
943,277 - A4249_RS04540 0.50 -0.1
943,277 - A4249_RS04540 0.50 -0.1
943,277 - A4249_RS04540 0.50 -0.7
943,465 + A4249_RS04540 0.83 -0.7
943,465 + A4249_RS04540 0.83 +0.1
943,465 + A4249_RS04540 0.83 +1.8
943,465 + A4249_RS04540 0.83 -0.9
943,465 + A4249_RS04540 0.83 +1.4
943,465 + A4249_RS04540 0.83 -0.1
943,465 + A4249_RS04540 0.83 -0.4
943,465 + A4249_RS04540 0.83 -0.9
943,466 - A4249_RS04540 0.83 +0.4
943,466 - A4249_RS04540 0.83 -1.6
943,466 - A4249_RS04540 0.83 +0.6
943,466 - A4249_RS04540 0.83 -0.1
943,558 + -0.3
943,558 + -1.0
943,558 + -0.0
943,558 + +0.2
943,559 - +0.6
943,559 - +0.2
943,559 - +0.3
943,559 - +0.2
943,569 - -0.5
943,636 + -0.8
943,636 + -0.3
943,636 + -0.3
943,636 + +0.6
943,637 - +0.4
943,707 + -0.1
943,707 + -0.1
943,707 + -0.1
943,707 + -1.1
943,707 + +0.2
943,708 - -0.3
943,871 + A4249_RS04545 0.11 -0.3
943,871 + A4249_RS04545 0.11 +1.8
943,872 - A4249_RS04545 0.11 +0.0
944,057 + A4249_RS04545 0.22 +1.8
944,057 + A4249_RS04545 0.22 +0.0
944,057 + A4249_RS04545 0.22 +0.4
944,057 + A4249_RS04545 0.22 -0.5
944,057 + A4249_RS04545 0.22 -0.7
944,057 + A4249_RS04545 0.22 -0.6
944,057 + A4249_RS04545 0.22 -0.1
944,058 - A4249_RS04545 0.22 -0.3
944,058 - A4249_RS04545 0.22 -0.8
944,058 - A4249_RS04545 0.22 -1.8
944,058 - A4249_RS04545 0.22 +1.2
944,058 - A4249_RS04545 0.22 -1.1
944,058 - A4249_RS04545 0.22 +0.0
944,058 - A4249_RS04545 0.22 +1.1
944,058 - A4249_RS04545 0.22 -0.1
944,072 + A4249_RS04545 0.23 +0.0
944,072 + A4249_RS04545 0.23 +0.7
944,073 - A4249_RS04545 0.23 -0.6
944,073 - A4249_RS04545 0.23 +0.0
944,073 - A4249_RS04545 0.23 +0.0
944,073 - A4249_RS04545 0.23 -0.3
944,073 - A4249_RS04545 0.23 +0.0
944,073 - A4249_RS04545 0.23 +0.4
944,073 - A4249_RS04545 0.23 +3.0
944,073 - A4249_RS04545 0.23 -1.0
944,073 - A4249_RS04545 0.23 +0.2
944,137 + A4249_RS04545 0.27 +0.4
944,137 + A4249_RS04545 0.27 -0.1
944,138 - A4249_RS04545 0.27 +0.2
944,180 - A4249_RS04545 0.30 -0.6
944,180 - A4249_RS04545 0.30 +0.0
944,390 + A4249_RS04545 0.43 +0.5
944,390 + A4249_RS04545 0.43 -0.1
944,390 + A4249_RS04545 0.43 -0.8
944,390 + A4249_RS04545 0.43 -1.3
944,390 + A4249_RS04545 0.43 -0.6
944,390 + A4249_RS04545 0.43 +1.9
944,390 + A4249_RS04545 0.43 -0.8
944,390 + A4249_RS04545 0.43 +0.1
944,390 + A4249_RS04545 0.43 +0.4
944,391 - A4249_RS04545 0.43 +0.3
944,391 - A4249_RS04545 0.43 +0.2
944,391 - A4249_RS04545 0.43 -0.4
944,391 - A4249_RS04545 0.43 -0.1
944,391 - A4249_RS04545 0.43 -1.1
944,391 - A4249_RS04545 0.43 +0.7
944,391 - A4249_RS04545 0.43 +0.1
944,391 - A4249_RS04545 0.43 +0.4
944,391 - A4249_RS04545 0.43 -0.3
944,391 - A4249_RS04545 0.43 +0.5
944,391 - A4249_RS04545 0.43 -1.1
944,391 - A4249_RS04545 0.43 -0.5
944,391 - A4249_RS04545 0.43 -1.4
944,391 - A4249_RS04545 0.43 +0.4
944,391 - A4249_RS04545 0.43 -1.0
944,391 - A4249_RS04545 0.43 -1.1
944,392 + A4249_RS04545 0.43 -0.6
944,393 - A4249_RS04545 0.43 +0.5
944,489 + A4249_RS04545 0.49 -0.5
944,489 + A4249_RS04545 0.49 -0.4
944,489 + A4249_RS04545 0.49 -0.4
944,489 + A4249_RS04545 0.49 +1.0
944,490 - A4249_RS04545 0.49 +0.4
944,490 - A4249_RS04545 0.49 +0.4
944,490 - A4249_RS04545 0.49 -1.0
944,541 - A4249_RS04545 0.53 -1.4
944,541 - A4249_RS04545 0.53 -0.9

Or see this region's nucleotide sequence