Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04350

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04340 and A4249_RS04345 are separated by 2 nucleotidesA4249_RS04345 and A4249_RS04350 overlap by 4 nucleotidesA4249_RS04350 and A4249_RS04355 are separated by 11 nucleotides A4249_RS04340: A4249_RS04340 - glycosyltransferase family 2 protein, at 898,634 to 899,566 _RS04340 A4249_RS04345: A4249_RS04345 - glycosyltransferase family A protein, at 899,569 to 900,501 _RS04345 A4249_RS04350: A4249_RS04350 - lipopolysaccharide biosynthesis protein, at 900,498 to 901,943 _RS04350 A4249_RS04355: A4249_RS04355 - exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase, at 901,955 to 903,439 _RS04355 Position (kb) 900 901 902Strain fitness (log2 ratio) -2 -1 0 1 2at 899.665 kb on - strand, within A4249_RS04345at 899.720 kb on + strand, within A4249_RS04345at 899.720 kb on + strand, within A4249_RS04345at 899.720 kb on + strand, within A4249_RS04345at 899.721 kb on - strand, within A4249_RS04345at 899.721 kb on - strand, within A4249_RS04345at 899.729 kb on + strand, within A4249_RS04345at 899.729 kb on + strand, within A4249_RS04345at 899.729 kb on + strand, within A4249_RS04345at 899.830 kb on - strand, within A4249_RS04345at 899.976 kb on + strand, within A4249_RS04345at 899.976 kb on + strand, within A4249_RS04345at 899.976 kb on + strand, within A4249_RS04345at 899.978 kb on + strand, within A4249_RS04345at 899.978 kb on + strand, within A4249_RS04345at 899.979 kb on - strand, within A4249_RS04345at 899.979 kb on - strand, within A4249_RS04345at 899.984 kb on + strand, within A4249_RS04345at 899.985 kb on - strand, within A4249_RS04345at 900.194 kb on + strand, within A4249_RS04345at 900.195 kb on - strand, within A4249_RS04345at 900.195 kb on - strand, within A4249_RS04345at 900.195 kb on - strand, within A4249_RS04345at 900.292 kb on - strand, within A4249_RS04345at 900.491 kb on + strandat 900.492 kb on - strandat 900.492 kb on - strandat 900.492 kb on - strandat 900.586 kb on + strandat 900.586 kb on + strandat 900.587 kb on - strandat 900.587 kb on - strandat 900.916 kb on + strand, within A4249_RS04350at 900.916 kb on + strand, within A4249_RS04350at 900.917 kb on - strand, within A4249_RS04350at 900.919 kb on + strand, within A4249_RS04350at 901.204 kb on + strand, within A4249_RS04350at 901.205 kb on - strand, within A4249_RS04350at 901.205 kb on - strand, within A4249_RS04350at 901.205 kb on - strand, within A4249_RS04350at 901.318 kb on + strand, within A4249_RS04350at 901.327 kb on + strand, within A4249_RS04350at 901.327 kb on + strand, within A4249_RS04350at 901.328 kb on - strand, within A4249_RS04350at 901.479 kb on + strand, within A4249_RS04350at 901.700 kb on - strand, within A4249_RS04350at 901.918 kb on + strandat 901.919 kb on - strandat 901.919 kb on - strandat 901.919 kb on - strandat 901.919 kb on - strandat 901.993 kb on + strandat 901.994 kb on - strandat 901.994 kb on - strandat 902.041 kb on + strandat 902.041 kb on + strandat 902.043 kb on + strandat 902.043 kb on + strandat 902.043 kb on + strandat 902.043 kb on + strandat 902.043 kb on + strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.044 kb on - strandat 902.160 kb on + strand, within A4249_RS04355at 902.160 kb on + strand, within A4249_RS04355at 902.161 kb on - strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.401 kb on + strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.402 kb on - strand, within A4249_RS04355at 902.526 kb on - strand, within A4249_RS04355at 902.526 kb on - strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.723 kb on + strand, within A4249_RS04355at 902.724 kb on - strand, within A4249_RS04355at 902.724 kb on - strand, within A4249_RS04355at 902.724 kb on - strand, within A4249_RS04355at 902.748 kb on + strand, within A4249_RS04355at 902.748 kb on + strand, within A4249_RS04355at 902.748 kb on + strand, within A4249_RS04355at 902.749 kb on - strand, within A4249_RS04355at 902.749 kb on - strand, within A4249_RS04355at 902.749 kb on - strand, within A4249_RS04355at 902.749 kb on - strand, within A4249_RS04355

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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899,665 - A4249_RS04345 0.10 -0.8
899,720 + A4249_RS04345 0.16 +0.9
899,720 + A4249_RS04345 0.16 +0.6
899,720 + A4249_RS04345 0.16 +0.1
899,721 - A4249_RS04345 0.16 +0.4
899,721 - A4249_RS04345 0.16 +0.9
899,729 + A4249_RS04345 0.17 -1.0
899,729 + A4249_RS04345 0.17 +1.7
899,729 + A4249_RS04345 0.17 -0.4
899,830 - A4249_RS04345 0.28 +1.4
899,976 + A4249_RS04345 0.44 -1.1
899,976 + A4249_RS04345 0.44 -0.1
899,976 + A4249_RS04345 0.44 +0.4
899,978 + A4249_RS04345 0.44 -0.1
899,978 + A4249_RS04345 0.44 +0.2
899,979 - A4249_RS04345 0.44 -0.7
899,979 - A4249_RS04345 0.44 +0.0
899,984 + A4249_RS04345 0.44 -1.6
899,985 - A4249_RS04345 0.45 -1.4
900,194 + A4249_RS04345 0.67 +0.4
900,195 - A4249_RS04345 0.67 -0.7
900,195 - A4249_RS04345 0.67 +0.0
900,195 - A4249_RS04345 0.67 -0.1
900,292 - A4249_RS04345 0.77 +0.5
900,491 + +1.0
900,492 - -0.3
900,492 - -1.1
900,492 - +0.1
900,586 + +1.8
900,586 + +0.4
900,587 - -0.4
900,587 - -0.4
900,916 + A4249_RS04350 0.29 +1.5
900,916 + A4249_RS04350 0.29 +0.0
900,917 - A4249_RS04350 0.29 -0.1
900,919 + A4249_RS04350 0.29 +0.0
901,204 + A4249_RS04350 0.49 +0.0
901,205 - A4249_RS04350 0.49 +0.7
901,205 - A4249_RS04350 0.49 +0.9
901,205 - A4249_RS04350 0.49 -0.4
901,318 + A4249_RS04350 0.57 -0.1
901,327 + A4249_RS04350 0.57 +1.5
901,327 + A4249_RS04350 0.57 -0.4
901,328 - A4249_RS04350 0.57 -0.1
901,479 + A4249_RS04350 0.68 +0.2
901,700 - A4249_RS04350 0.83 +1.0
901,918 + +0.9
901,919 - +0.7
901,919 - +0.7
901,919 - +0.5
901,919 - +0.3
901,993 + -0.8
901,994 - -1.8
901,994 - +0.4
902,041 + +0.2
902,041 + +0.8
902,043 + -0.9
902,043 + -0.2
902,043 + -1.1
902,043 + +1.0
902,043 + -0.1
902,044 - +0.6
902,044 - +0.9
902,044 - -0.2
902,044 - +0.2
902,044 - +0.7
902,044 - +0.1
902,044 - -0.0
902,160 + A4249_RS04355 0.14 -0.0
902,160 + A4249_RS04355 0.14 -0.2
902,161 - A4249_RS04355 0.14 -0.5
902,401 + A4249_RS04355 0.30 -1.1
902,401 + A4249_RS04355 0.30 +0.9
902,401 + A4249_RS04355 0.30 -0.0
902,401 + A4249_RS04355 0.30 -0.3
902,401 + A4249_RS04355 0.30 -1.6
902,401 + A4249_RS04355 0.30 +0.7
902,401 + A4249_RS04355 0.30 +0.3
902,401 + A4249_RS04355 0.30 +0.4
902,401 + A4249_RS04355 0.30 +0.0
902,401 + A4249_RS04355 0.30 +0.2
902,402 - A4249_RS04355 0.30 +1.0
902,402 - A4249_RS04355 0.30 -0.2
902,402 - A4249_RS04355 0.30 -1.5
902,402 - A4249_RS04355 0.30 -0.8
902,402 - A4249_RS04355 0.30 -0.2
902,402 - A4249_RS04355 0.30 +0.3
902,402 - A4249_RS04355 0.30 +0.9
902,402 - A4249_RS04355 0.30 +1.0
902,402 - A4249_RS04355 0.30 +0.4
902,526 - A4249_RS04355 0.38 -0.6
902,526 - A4249_RS04355 0.38 +1.0
902,723 + A4249_RS04355 0.52 -0.4
902,723 + A4249_RS04355 0.52 -0.2
902,723 + A4249_RS04355 0.52 -0.4
902,723 + A4249_RS04355 0.52 -0.7
902,723 + A4249_RS04355 0.52 +0.1
902,723 + A4249_RS04355 0.52 -0.7
902,723 + A4249_RS04355 0.52 -0.1
902,724 - A4249_RS04355 0.52 +0.2
902,724 - A4249_RS04355 0.52 +0.5
902,724 - A4249_RS04355 0.52 -0.3
902,748 + A4249_RS04355 0.53 -0.4
902,748 + A4249_RS04355 0.53 +0.2
902,748 + A4249_RS04355 0.53 -0.7
902,749 - A4249_RS04355 0.53 -1.4
902,749 - A4249_RS04355 0.53 +1.3
902,749 - A4249_RS04355 0.53 -1.3
902,749 - A4249_RS04355 0.53 +1.3

Or see this region's nucleotide sequence