Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04225 and A4249_RS04230 are separated by 199 nucleotides A4249_RS04230 and A4249_RS04235 are separated by 138 nucleotides A4249_RS04235 and A4249_RS04240 overlap by 4 nucleotides
A4249_RS04225: A4249_RS04225 - DNA mismatch repair endonuclease MutL, at 874,708 to 876,600
_RS04225
A4249_RS04230: A4249_RS04230 - type I DNA topoisomerase, at 876,800 to 879,406
_RS04230
A4249_RS04235: A4249_RS04235 - hypothetical protein, at 879,545 to 879,739
_RS04235
A4249_RS04240: A4249_RS04240 - DNA-processing protein DprA, at 879,736 to 880,809
_RS04240
Position (kb) 876
877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.822 kb on + strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.823 kb on - strand, within A4249_RS04225 at 875.849 kb on + strand, within A4249_RS04225 at 875.849 kb on + strand, within A4249_RS04225 at 875.849 kb on + strand, within A4249_RS04225 at 875.850 kb on - strand, within A4249_RS04225 at 875.867 kb on + strand, within A4249_RS04225 at 876.081 kb on + strand, within A4249_RS04225 at 876.082 kb on - strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.131 kb on + strand, within A4249_RS04225 at 876.132 kb on - strand, within A4249_RS04225 at 876.132 kb on - strand, within A4249_RS04225 at 876.132 kb on - strand, within A4249_RS04225 at 876.477 kb on + strand at 876.614 kb on + strand at 876.614 kb on + strand at 876.615 kb on - strand at 876.615 kb on - strand at 876.709 kb on + strand at 876.709 kb on + strand at 876.710 kb on - strand at 876.710 kb on - strand at 876.710 kb on - strand at 877.006 kb on - strand at 877.006 kb on - strand at 879.596 kb on - strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.626 kb on + strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.627 kb on - strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.628 kb on + strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.629 kb on - strand, within A4249_RS04235 at 879.737 kb on + strand at 879.737 kb on + strand at 879.738 kb on - strand at 879.748 kb on + strand at 879.748 kb on + strand at 879.749 kb on - strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.763 kb on + strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 879.764 kb on - strand at 880.147 kb on + strand, within A4249_RS04240 at 880.147 kb on + strand, within A4249_RS04240 at 880.147 kb on + strand, within A4249_RS04240 at 880.148 kb on - strand, within A4249_RS04240 at 880.265 kb on + strand, within A4249_RS04240 at 880.266 kb on - strand, within A4249_RS04240 at 880.266 kb on - strand, within A4249_RS04240 at 880.289 kb on + strand, within A4249_RS04240 at 880.289 kb on + strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.290 kb on - strand, within A4249_RS04240 at 880.337 kb on - strand, within A4249_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 875,822 + A4249_RS04225 0.59 -0.2 875,822 + A4249_RS04225 0.59 -0.3 875,822 + A4249_RS04225 0.59 -1.4 875,822 + A4249_RS04225 0.59 +0.4 875,822 + A4249_RS04225 0.59 -0.8 875,822 + A4249_RS04225 0.59 -1.5 875,822 + A4249_RS04225 0.59 +1.0 875,822 + A4249_RS04225 0.59 -1.1 875,823 - A4249_RS04225 0.59 -0.6 875,823 - A4249_RS04225 0.59 -0.9 875,823 - A4249_RS04225 0.59 +1.1 875,823 - A4249_RS04225 0.59 -0.4 875,823 - A4249_RS04225 0.59 -0.5 875,823 - A4249_RS04225 0.59 -0.4 875,849 + A4249_RS04225 0.60 -0.4 875,849 + A4249_RS04225 0.60 +0.2 875,849 + A4249_RS04225 0.60 +0.6 875,850 - A4249_RS04225 0.60 -1.8 875,867 + A4249_RS04225 0.61 -0.5 876,081 + A4249_RS04225 0.73 +0.2 876,082 - A4249_RS04225 0.73 +0.7 876,131 + A4249_RS04225 0.75 -0.2 876,131 + A4249_RS04225 0.75 -0.1 876,131 + A4249_RS04225 0.75 +1.5 876,131 + A4249_RS04225 0.75 -0.0 876,131 + A4249_RS04225 0.75 +1.8 876,131 + A4249_RS04225 0.75 +1.6 876,131 + A4249_RS04225 0.75 +0.4 876,131 + A4249_RS04225 0.75 +0.7 876,132 - A4249_RS04225 0.75 -0.7 876,132 - A4249_RS04225 0.75 -0.1 876,132 - A4249_RS04225 0.75 -0.4 876,477 + +0.1 876,614 + -0.0 876,614 + -0.2 876,615 - +0.9 876,615 - -0.8 876,709 + -1.2 876,709 + +1.0 876,710 - -0.0 876,710 - +0.5 876,710 - -0.8 877,006 - +0.7 877,006 - +0.5 879,596 - A4249_RS04235 0.26 -0.5 879,626 + A4249_RS04235 0.42 -0.2 879,626 + A4249_RS04235 0.42 -0.4 879,626 + A4249_RS04235 0.42 +0.8 879,626 + A4249_RS04235 0.42 -0.7 879,626 + A4249_RS04235 0.42 -1.0 879,626 + A4249_RS04235 0.42 -0.3 879,627 - A4249_RS04235 0.42 -0.6 879,627 - A4249_RS04235 0.42 -0.4 879,627 - A4249_RS04235 0.42 +1.2 879,627 - A4249_RS04235 0.42 -0.6 879,627 - A4249_RS04235 0.42 +0.1 879,627 - A4249_RS04235 0.42 -0.9 879,628 + A4249_RS04235 0.43 +1.0 879,628 + A4249_RS04235 0.43 -0.8 879,628 + A4249_RS04235 0.43 -0.5 879,628 + A4249_RS04235 0.43 -0.4 879,628 + A4249_RS04235 0.43 -0.2 879,629 - A4249_RS04235 0.43 +0.8 879,629 - A4249_RS04235 0.43 +0.5 879,629 - A4249_RS04235 0.43 -1.0 879,629 - A4249_RS04235 0.43 -0.1 879,629 - A4249_RS04235 0.43 -0.2 879,629 - A4249_RS04235 0.43 -0.5 879,629 - A4249_RS04235 0.43 -0.2 879,629 - A4249_RS04235 0.43 -0.3 879,629 - A4249_RS04235 0.43 +0.0 879,629 - A4249_RS04235 0.43 -0.8 879,629 - A4249_RS04235 0.43 +0.6 879,737 + -1.3 879,737 + -0.8 879,738 - -1.3 879,748 + -1.2 879,748 + -0.2 879,749 - -0.3 879,763 + -0.5 879,763 + +0.0 879,763 + -1.0 879,763 + -0.3 879,763 + +1.0 879,763 + +0.5 879,764 - -0.5 879,764 - +0.2 879,764 - +0.7 879,764 - -1.4 879,764 - -2.0 879,764 - -0.0 879,764 - -0.0 880,147 + A4249_RS04240 0.38 +0.6 880,147 + A4249_RS04240 0.38 -0.5 880,147 + A4249_RS04240 0.38 -0.2 880,148 - A4249_RS04240 0.38 +0.7 880,265 + A4249_RS04240 0.49 -0.5 880,266 - A4249_RS04240 0.49 -0.3 880,266 - A4249_RS04240 0.49 -0.3 880,289 + A4249_RS04240 0.51 +0.5 880,289 + A4249_RS04240 0.51 +0.2 880,290 - A4249_RS04240 0.52 +1.3 880,290 - A4249_RS04240 0.52 +0.1 880,290 - A4249_RS04240 0.52 +0.4 880,290 - A4249_RS04240 0.52 +0.2 880,290 - A4249_RS04240 0.52 +0.9 880,337 - A4249_RS04240 0.56 -0.7
Or see this region's nucleotide sequence