Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04185 and A4249_RS04190 are separated by 40 nucleotides A4249_RS04190 and A4249_RS04195 are separated by 50 nucleotides A4249_RS04195 and A4249_RS04200 are separated by 12 nucleotides
A4249_RS04185: A4249_RS04185 - nitronate monooxygenase, at 867,777 to 868,823
_RS04185
A4249_RS04190: A4249_RS04190 - MliC family protein, at 868,864 to 869,289
_RS04190
A4249_RS04195: A4249_RS04195 - tRNA adenosine(34) deaminase TadA, at 869,340 to 869,798
_RS04195
A4249_RS04200: A4249_RS04200 - pseudouridine synthase, at 869,811 to 871,364
_RS04200
Position (kb) 868
869
870 Strain fitness (log2 ratio) -2
-1
0
1 at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185 at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.834 kb on + strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 868.835 kb on - strand at 869.084 kb on + strand, within A4249_RS04190 at 869.084 kb on + strand, within A4249_RS04190 at 869.085 kb on - strand, within A4249_RS04190 at 869.085 kb on - strand, within A4249_RS04190 at 869.246 kb on - strand, within A4249_RS04190 at 869.341 kb on + strand at 869.341 kb on + strand at 869.341 kb on + strand at 869.342 kb on - strand at 869.342 kb on - strand at 869.823 kb on - strand at 869.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 867,925 + A4249_RS04185 0.14 -0.3 867,925 + A4249_RS04185 0.14 -0.1 867,925 + A4249_RS04185 0.14 -0.5 867,925 + A4249_RS04185 0.14 +0.8 867,926 - A4249_RS04185 0.14 -0.7 867,926 - A4249_RS04185 0.14 +1.1 867,926 - A4249_RS04185 0.14 -1.0 867,926 - A4249_RS04185 0.14 -0.0 867,926 - A4249_RS04185 0.14 -0.2 867,926 - A4249_RS04185 0.14 -0.5 868,194 + A4249_RS04185 0.40 -0.4 868,194 + A4249_RS04185 0.40 -0.4 868,194 + A4249_RS04185 0.40 +0.5 868,194 + A4249_RS04185 0.40 -2.4 868,194 + A4249_RS04185 0.40 -0.8 868,194 + A4249_RS04185 0.40 +0.2 868,195 - A4249_RS04185 0.40 +0.1 868,195 - A4249_RS04185 0.40 -1.1 868,195 - A4249_RS04185 0.40 +0.3 868,195 - A4249_RS04185 0.40 -0.1 868,504 + A4249_RS04185 0.69 -0.6 868,504 + A4249_RS04185 0.69 +0.2 868,504 + A4249_RS04185 0.69 -0.4 868,504 + A4249_RS04185 0.69 +1.0 868,505 - A4249_RS04185 0.70 -0.4 868,505 - A4249_RS04185 0.70 -0.3 868,505 - A4249_RS04185 0.70 -0.3 868,834 + +0.1 868,834 + -1.9 868,834 + -0.0 868,834 + -1.4 868,834 + -0.4 868,834 + -0.7 868,834 + +0.5 868,834 + -0.8 868,834 + +0.7 868,834 + -0.0 868,834 + +0.7 868,834 + +0.0 868,834 + +0.8 868,834 + +0.2 868,835 - +0.5 868,835 - -0.6 868,835 - -1.0 868,835 - -0.4 868,835 - -0.1 868,835 - -0.6 868,835 - -0.1 868,835 - +0.1 868,835 - -0.5 868,835 - +0.3 868,835 - +0.7 868,835 - +0.4 869,084 + A4249_RS04190 0.52 -1.4 869,084 + A4249_RS04190 0.52 -0.9 869,085 - A4249_RS04190 0.52 -0.3 869,085 - A4249_RS04190 0.52 -0.1 869,246 - A4249_RS04190 0.90 -1.6 869,341 + -0.9 869,341 + -0.9 869,341 + -0.2 869,342 - -0.1 869,342 - +0.3 869,823 - -0.8 869,882 + +0.7
Or see this region's nucleotide sequence