Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04175 and A4249_RS04180 overlap by 1 nucleotides A4249_RS04180 and A4249_RS04185 overlap by 4 nucleotides
A4249_RS04175: A4249_RS04175 - 3-dehydroquinate synthase, at 866,087 to 867,193
_RS04175
A4249_RS04180: A4249_RS04180 - GNAT family protein, at 867,193 to 867,780
_RS04180
A4249_RS04185: A4249_RS04185 - nitronate monooxygenase, at 867,777 to 868,823
_RS04185
Position (kb) 867
868 Strain fitness (log2 ratio) -2
-1
0
1
2 at 867.325 kb on + strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.326 kb on - strand, within A4249_RS04180 at 867.381 kb on + strand, within A4249_RS04180 at 867.394 kb on + strand, within A4249_RS04180 at 867.395 kb on - strand, within A4249_RS04180 at 867.445 kb on + strand, within A4249_RS04180 at 867.445 kb on + strand, within A4249_RS04180 at 867.445 kb on + strand, within A4249_RS04180 at 867.445 kb on + strand, within A4249_RS04180 at 867.445 kb on + strand, within A4249_RS04180 at 867.446 kb on - strand, within A4249_RS04180 at 867.446 kb on - strand, within A4249_RS04180 at 867.446 kb on - strand, within A4249_RS04180 at 867.446 kb on - strand, within A4249_RS04180 at 867.493 kb on + strand, within A4249_RS04180 at 867.493 kb on + strand, within A4249_RS04180 at 867.493 kb on + strand, within A4249_RS04180 at 867.494 kb on - strand, within A4249_RS04180 at 867.494 kb on - strand, within A4249_RS04180 at 867.635 kb on + strand, within A4249_RS04180 at 867.635 kb on + strand, within A4249_RS04180 at 867.635 kb on + strand, within A4249_RS04180 at 867.636 kb on - strand, within A4249_RS04180 at 867.636 kb on - strand, within A4249_RS04180 at 867.779 kb on - strand at 867.779 kb on - strand at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.925 kb on + strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 867.926 kb on - strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.194 kb on + strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.195 kb on - strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.504 kb on + strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185 at 868.505 kb on - strand, within A4249_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 867,325 + A4249_RS04180 0.22 -2.1 867,326 - A4249_RS04180 0.23 -1.1 867,326 - A4249_RS04180 0.23 +0.0 867,326 - A4249_RS04180 0.23 -0.9 867,326 - A4249_RS04180 0.23 +0.2 867,326 - A4249_RS04180 0.23 -1.0 867,326 - A4249_RS04180 0.23 -0.0 867,326 - A4249_RS04180 0.23 +1.0 867,326 - A4249_RS04180 0.23 -0.1 867,381 + A4249_RS04180 0.32 -0.6 867,394 + A4249_RS04180 0.34 -0.5 867,395 - A4249_RS04180 0.34 -0.1 867,445 + A4249_RS04180 0.43 -1.2 867,445 + A4249_RS04180 0.43 -1.2 867,445 + A4249_RS04180 0.43 +0.4 867,445 + A4249_RS04180 0.43 -0.4 867,445 + A4249_RS04180 0.43 +1.2 867,446 - A4249_RS04180 0.43 -1.0 867,446 - A4249_RS04180 0.43 -0.9 867,446 - A4249_RS04180 0.43 -1.1 867,446 - A4249_RS04180 0.43 +1.5 867,493 + A4249_RS04180 0.51 -0.3 867,493 + A4249_RS04180 0.51 +0.6 867,493 + A4249_RS04180 0.51 +0.2 867,494 - A4249_RS04180 0.51 +0.7 867,494 - A4249_RS04180 0.51 -0.7 867,635 + A4249_RS04180 0.75 -0.3 867,635 + A4249_RS04180 0.75 +0.1 867,635 + A4249_RS04180 0.75 +0.2 867,636 - A4249_RS04180 0.75 -1.2 867,636 - A4249_RS04180 0.75 +1.8 867,779 - -0.5 867,779 - +0.2 867,925 + A4249_RS04185 0.14 -0.3 867,925 + A4249_RS04185 0.14 -0.1 867,925 + A4249_RS04185 0.14 -0.5 867,925 + A4249_RS04185 0.14 +0.8 867,926 - A4249_RS04185 0.14 -0.7 867,926 - A4249_RS04185 0.14 +1.1 867,926 - A4249_RS04185 0.14 -1.0 867,926 - A4249_RS04185 0.14 -0.0 867,926 - A4249_RS04185 0.14 -0.2 867,926 - A4249_RS04185 0.14 -0.5 868,194 + A4249_RS04185 0.40 -0.4 868,194 + A4249_RS04185 0.40 -0.4 868,194 + A4249_RS04185 0.40 +0.5 868,194 + A4249_RS04185 0.40 -2.4 868,194 + A4249_RS04185 0.40 -0.8 868,194 + A4249_RS04185 0.40 +0.2 868,195 - A4249_RS04185 0.40 +0.1 868,195 - A4249_RS04185 0.40 -1.1 868,195 - A4249_RS04185 0.40 +0.3 868,195 - A4249_RS04185 0.40 -0.1 868,504 + A4249_RS04185 0.69 -0.6 868,504 + A4249_RS04185 0.69 +0.2 868,504 + A4249_RS04185 0.69 -0.4 868,504 + A4249_RS04185 0.69 +1.0 868,505 - A4249_RS04185 0.70 -0.4 868,505 - A4249_RS04185 0.70 -0.3 868,505 - A4249_RS04185 0.70 -0.3
Or see this region's nucleotide sequence