Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04170

Experiment: Cytidine 0.41115 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04165 and A4249_RS17025 are separated by 3 nucleotidesA4249_RS17025 and A4249_RS04170 overlap by 4 nucleotidesA4249_RS04170 and A4249_RS04175 overlap by 4 nucleotides A4249_RS04165: A4249_RS04165 - site-specific tyrosine recombinase XerD, at 864,478 to 865,398 _RS04165 A4249_RS17025: A4249_RS17025 - hypothetical protein, at 865,402 to 865,527 _RS17025 A4249_RS04170: A4249_RS04170 - shikimate kinase, at 865,524 to 866,090 _RS04170 A4249_RS04175: A4249_RS04175 - 3-dehydroquinate synthase, at 866,087 to 867,193 _RS04175 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1at 864.548 kb on + strandat 864.549 kb on - strandat 864.549 kb on - strandat 865.164 kb on - strand, within A4249_RS04165at 865.164 kb on - strand, within A4249_RS04165at 865.164 kb on - strand, within A4249_RS04165at 865.336 kb on - strandat 865.336 kb on - strandat 865.336 kb on - strandat 865.445 kb on + strand, within A4249_RS17025at 865.561 kb on + strandat 865.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C)
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864,548 + +0.9
864,549 - -0.1
864,549 - -0.4
865,164 - A4249_RS04165 0.74 +0.2
865,164 - A4249_RS04165 0.74 +0.7
865,164 - A4249_RS04165 0.74 +0.9
865,336 - +0.5
865,336 - -0.8
865,336 - +1.5
865,445 + A4249_RS17025 0.34 -2.1
865,561 + +1.2
865,561 + +0.2

Or see this region's nucleotide sequence