Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04095 and A4249_RS04100 are separated by 4 nucleotides A4249_RS04100 and A4249_RS04105 are separated by 45 nucleotides A4249_RS04105 and A4249_RS04110 are separated by 80 nucleotides
A4249_RS04095: A4249_RS04095 - SDR family oxidoreductase, at 851,795 to 852,472
_RS04095
A4249_RS04100: A4249_RS04100 - J domain-containing protein, at 852,477 to 853,145
_RS04100
A4249_RS04105: A4249_RS04105 - BolA family transcriptional regulator, at 853,191 to 853,487
_RS04105
A4249_RS04110: A4249_RS04110 - response regulator, at 853,568 to 855,385
_RS04110
Position (kb) 853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 852.200 kb on + strand, within A4249_RS04095 at 852.200 kb on + strand, within A4249_RS04095 at 852.200 kb on + strand, within A4249_RS04095 at 852.200 kb on + strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.201 kb on - strand, within A4249_RS04095 at 852.389 kb on + strand, within A4249_RS04095 at 852.389 kb on + strand, within A4249_RS04095 at 852.389 kb on + strand, within A4249_RS04095 at 852.390 kb on - strand, within A4249_RS04095 at 852.390 kb on - strand, within A4249_RS04095 at 852.390 kb on - strand, within A4249_RS04095 at 852.390 kb on - strand, within A4249_RS04095 at 852.461 kb on + strand at 852.461 kb on + strand at 852.462 kb on - strand at 852.462 kb on - strand at 852.462 kb on - strand at 852.471 kb on - strand at 852.471 kb on - strand at 852.471 kb on - strand at 852.595 kb on + strand, within A4249_RS04100 at 852.596 kb on - strand, within A4249_RS04100 at 852.596 kb on - strand, within A4249_RS04100 at 852.596 kb on - strand, within A4249_RS04100 at 852.904 kb on + strand, within A4249_RS04100 at 852.904 kb on + strand, within A4249_RS04100 at 852.905 kb on - strand, within A4249_RS04100 at 852.905 kb on - strand, within A4249_RS04100 at 852.905 kb on - strand, within A4249_RS04100 at 852.925 kb on + strand, within A4249_RS04100 at 852.925 kb on + strand, within A4249_RS04100 at 852.925 kb on + strand, within A4249_RS04100 at 852.926 kb on - strand, within A4249_RS04100 at 852.955 kb on + strand, within A4249_RS04100 at 852.955 kb on + strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 852.956 kb on - strand, within A4249_RS04100 at 853.126 kb on + strand at 853.127 kb on - strand at 853.127 kb on - strand at 853.127 kb on - strand at 853.157 kb on + strand at 853.157 kb on + strand at 853.157 kb on + strand at 853.157 kb on + strand at 853.157 kb on + strand at 853.157 kb on + strand at 853.158 kb on - strand at 853.218 kb on - strand at 853.218 kb on - strand at 853.218 kb on - strand at 853.218 kb on - strand at 853.514 kb on + strand at 853.514 kb on + strand at 853.514 kb on + strand at 853.514 kb on + strand at 853.515 kb on - strand at 853.515 kb on - strand at 853.528 kb on + strand at 853.567 kb on + strand at 853.567 kb on + strand at 853.567 kb on + strand at 853.567 kb on + strand at 853.568 kb on - strand at 853.568 kb on - strand at 853.568 kb on - strand at 853.661 kb on + strand at 853.661 kb on + strand at 853.661 kb on + strand at 853.661 kb on + strand at 853.662 kb on - strand at 853.662 kb on - strand at 853.662 kb on - strand at 853.670 kb on + strand at 853.670 kb on + strand at 853.671 kb on - strand at 853.840 kb on + strand, within A4249_RS04110 at 853.864 kb on + strand, within A4249_RS04110 at 853.864 kb on + strand, within A4249_RS04110 at 853.864 kb on + strand, within A4249_RS04110 at 853.864 kb on + strand, within A4249_RS04110 at 853.865 kb on - strand, within A4249_RS04110 at 853.865 kb on - strand, within A4249_RS04110 at 853.940 kb on + strand, within A4249_RS04110 at 854.003 kb on + strand, within A4249_RS04110 at 854.333 kb on + strand, within A4249_RS04110 at 854.333 kb on + strand, within A4249_RS04110 at 854.334 kb on - strand, within A4249_RS04110 at 854.334 kb on - strand, within A4249_RS04110 at 854.334 kb on - strand, within A4249_RS04110 at 854.334 kb on - strand, within A4249_RS04110
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 852,200 + A4249_RS04095 0.60 +1.0 852,200 + A4249_RS04095 0.60 +1.1 852,200 + A4249_RS04095 0.60 -0.2 852,200 + A4249_RS04095 0.60 +0.8 852,201 - A4249_RS04095 0.60 -0.1 852,201 - A4249_RS04095 0.60 -0.3 852,201 - A4249_RS04095 0.60 -0.6 852,201 - A4249_RS04095 0.60 -1.1 852,201 - A4249_RS04095 0.60 -0.1 852,201 - A4249_RS04095 0.60 -0.5 852,389 + A4249_RS04095 0.88 -0.5 852,389 + A4249_RS04095 0.88 -1.1 852,389 + A4249_RS04095 0.88 +0.7 852,390 - A4249_RS04095 0.88 -0.2 852,390 - A4249_RS04095 0.88 -2.0 852,390 - A4249_RS04095 0.88 -2.0 852,390 - A4249_RS04095 0.88 +1.5 852,461 + +0.1 852,461 + -0.3 852,462 - -0.7 852,462 - -0.6 852,462 - +0.9 852,471 - -0.2 852,471 - -0.2 852,471 - +0.7 852,595 + A4249_RS04100 0.18 -1.0 852,596 - A4249_RS04100 0.18 +0.9 852,596 - A4249_RS04100 0.18 +0.4 852,596 - A4249_RS04100 0.18 +1.0 852,904 + A4249_RS04100 0.64 -0.5 852,904 + A4249_RS04100 0.64 +0.9 852,905 - A4249_RS04100 0.64 +0.3 852,905 - A4249_RS04100 0.64 -1.5 852,905 - A4249_RS04100 0.64 +0.2 852,925 + A4249_RS04100 0.67 +0.2 852,925 + A4249_RS04100 0.67 +1.5 852,925 + A4249_RS04100 0.67 -0.2 852,926 - A4249_RS04100 0.67 -0.5 852,955 + A4249_RS04100 0.71 -0.6 852,955 + A4249_RS04100 0.71 -0.7 852,956 - A4249_RS04100 0.72 -1.0 852,956 - A4249_RS04100 0.72 -0.8 852,956 - A4249_RS04100 0.72 -0.9 852,956 - A4249_RS04100 0.72 -0.7 852,956 - A4249_RS04100 0.72 -0.3 852,956 - A4249_RS04100 0.72 -1.3 852,956 - A4249_RS04100 0.72 -0.4 852,956 - A4249_RS04100 0.72 +0.6 853,126 + -0.3 853,127 - +0.0 853,127 - -0.8 853,127 - -0.2 853,157 + -0.4 853,157 + -0.4 853,157 + +0.0 853,157 + -0.5 853,157 + -0.8 853,157 + +2.6 853,158 - +0.5 853,218 - +0.7 853,218 - -0.6 853,218 - +0.7 853,218 - +0.7 853,514 + -0.7 853,514 + -0.6 853,514 + -0.1 853,514 + +0.4 853,515 - +0.5 853,515 - -0.3 853,528 + +0.8 853,567 + -1.3 853,567 + +0.7 853,567 + -0.1 853,567 + +0.2 853,568 - +0.8 853,568 - +0.2 853,568 - +0.6 853,661 + -0.3 853,661 + -1.0 853,661 + -1.3 853,661 + -0.4 853,662 - +0.7 853,662 - -0.0 853,662 - +0.8 853,670 + -1.9 853,670 + -0.7 853,671 - +0.2 853,840 + A4249_RS04110 0.15 +0.2 853,864 + A4249_RS04110 0.16 +0.5 853,864 + A4249_RS04110 0.16 -0.3 853,864 + A4249_RS04110 0.16 -0.4 853,864 + A4249_RS04110 0.16 -0.4 853,865 - A4249_RS04110 0.16 +1.2 853,865 - A4249_RS04110 0.16 -0.0 853,940 + A4249_RS04110 0.20 +0.9 854,003 + A4249_RS04110 0.24 -0.5 854,333 + A4249_RS04110 0.42 -0.5 854,333 + A4249_RS04110 0.42 -0.1 854,334 - A4249_RS04110 0.42 +0.0 854,334 - A4249_RS04110 0.42 +0.1 854,334 - A4249_RS04110 0.42 +1.1 854,334 - A4249_RS04110 0.42 -1.9
Or see this region's nucleotide sequence