Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03595 and A4249_RS03600 are separated by 356 nucleotides A4249_RS03600 and A4249_RS03605 are separated by 49 nucleotides
A4249_RS03595: A4249_RS03595 - 3-hydroxyisobutyrate dehydrogenase, at 754,691 to 755,593
_RS03595
A4249_RS03600: A4249_RS03600 - LacI family DNA-binding transcriptional regulator, at 755,950 to 757,020
_RS03600
A4249_RS03605: A4249_RS03605 - TonB-dependent receptor, at 757,070 to 760,090
_RS03605
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -2
-1
0
1
2 at 755.025 kb on - strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.339 kb on + strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.340 kb on - strand, within A4249_RS03595 at 755.342 kb on + strand, within A4249_RS03595 at 755.342 kb on + strand, within A4249_RS03595 at 755.342 kb on + strand, within A4249_RS03595 at 755.342 kb on + strand, within A4249_RS03595 at 755.342 kb on + strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.343 kb on - strand, within A4249_RS03595 at 755.387 kb on + strand, within A4249_RS03595 at 755.387 kb on + strand, within A4249_RS03595 at 755.388 kb on - strand, within A4249_RS03595 at 755.388 kb on - strand, within A4249_RS03595 at 755.388 kb on - strand, within A4249_RS03595 at 755.499 kb on - strand, within A4249_RS03595 at 755.499 kb on - strand, within A4249_RS03595 at 755.499 kb on - strand, within A4249_RS03595 at 755.499 kb on - strand, within A4249_RS03595 at 755.499 kb on - strand, within A4249_RS03595 at 755.581 kb on + strand at 755.582 kb on - strand at 755.582 kb on - strand at 755.591 kb on + strand at 755.591 kb on + strand at 755.591 kb on + strand at 755.592 kb on - strand at 755.653 kb on - strand at 755.775 kb on + strand at 755.775 kb on + strand at 755.775 kb on + strand at 755.776 kb on - strand at 755.961 kb on + strand at 755.962 kb on - strand at 756.136 kb on + strand, within A4249_RS03600 at 756.136 kb on + strand, within A4249_RS03600 at 756.136 kb on + strand, within A4249_RS03600 at 756.136 kb on + strand, within A4249_RS03600 at 756.136 kb on + strand, within A4249_RS03600 at 756.136 kb on + strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.137 kb on - strand, within A4249_RS03600 at 756.592 kb on + strand, within A4249_RS03600 at 757.018 kb on + strand at 757.019 kb on - strand at 757.019 kb on - strand at 757.090 kb on + strand at 757.090 kb on + strand at 757.091 kb on - strand at 757.286 kb on + strand at 757.286 kb on + strand at 757.286 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.288 kb on + strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.289 kb on - strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.316 kb on + strand at 757.317 kb on - strand at 757.317 kb on - strand at 757.566 kb on + strand, within A4249_RS03605 at 757.567 kb on - strand, within A4249_RS03605 at 757.696 kb on + strand, within A4249_RS03605 at 757.696 kb on + strand, within A4249_RS03605 at 757.696 kb on + strand, within A4249_RS03605 at 757.696 kb on + strand, within A4249_RS03605 at 757.800 kb on - strand, within A4249_RS03605 at 757.881 kb on - strand, within A4249_RS03605 at 757.881 kb on - strand, within A4249_RS03605 at 757.961 kb on + strand, within A4249_RS03605 at 757.961 kb on + strand, within A4249_RS03605 at 757.962 kb on - strand, within A4249_RS03605 at 758.018 kb on + strand, within A4249_RS03605 at 758.018 kb on + strand, within A4249_RS03605 at 758.018 kb on + strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605 at 758.019 kb on - strand, within A4249_RS03605
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 755,025 - A4249_RS03595 0.37 +0.2 755,339 + A4249_RS03595 0.72 -0.6 755,339 + A4249_RS03595 0.72 -1.0 755,339 + A4249_RS03595 0.72 -0.6 755,339 + A4249_RS03595 0.72 -0.4 755,339 + A4249_RS03595 0.72 -1.3 755,339 + A4249_RS03595 0.72 +0.6 755,339 + A4249_RS03595 0.72 -0.6 755,339 + A4249_RS03595 0.72 +0.5 755,339 + A4249_RS03595 0.72 -1.2 755,339 + A4249_RS03595 0.72 -0.6 755,339 + A4249_RS03595 0.72 -0.4 755,339 + A4249_RS03595 0.72 -1.0 755,340 - A4249_RS03595 0.72 -0.6 755,340 - A4249_RS03595 0.72 +0.1 755,340 - A4249_RS03595 0.72 +0.7 755,340 - A4249_RS03595 0.72 -0.9 755,340 - A4249_RS03595 0.72 -1.2 755,340 - A4249_RS03595 0.72 -0.0 755,340 - A4249_RS03595 0.72 +0.5 755,340 - A4249_RS03595 0.72 -0.6 755,340 - A4249_RS03595 0.72 +1.1 755,340 - A4249_RS03595 0.72 +0.5 755,340 - A4249_RS03595 0.72 -0.4 755,342 + A4249_RS03595 0.72 +0.3 755,342 + A4249_RS03595 0.72 +0.4 755,342 + A4249_RS03595 0.72 -2.7 755,342 + A4249_RS03595 0.72 -1.0 755,342 + A4249_RS03595 0.72 -0.7 755,343 - A4249_RS03595 0.72 -0.5 755,343 - A4249_RS03595 0.72 +0.3 755,343 - A4249_RS03595 0.72 -1.3 755,343 - A4249_RS03595 0.72 +1.1 755,343 - A4249_RS03595 0.72 -0.1 755,343 - A4249_RS03595 0.72 -0.3 755,387 + A4249_RS03595 0.77 +0.6 755,387 + A4249_RS03595 0.77 +0.5 755,388 - A4249_RS03595 0.77 -0.7 755,388 - A4249_RS03595 0.77 -0.0 755,388 - A4249_RS03595 0.77 +0.5 755,499 - A4249_RS03595 0.89 +0.4 755,499 - A4249_RS03595 0.89 +0.4 755,499 - A4249_RS03595 0.89 -1.2 755,499 - A4249_RS03595 0.89 -0.3 755,499 - A4249_RS03595 0.89 -0.3 755,581 + -1.1 755,582 - -0.8 755,582 - +0.4 755,591 + +1.9 755,591 + -1.5 755,591 + +0.1 755,592 - -0.3 755,653 - -0.4 755,775 + -0.5 755,775 + -1.7 755,775 + +0.3 755,776 - -0.4 755,961 + +0.2 755,962 - +0.1 756,136 + A4249_RS03600 0.17 -0.2 756,136 + A4249_RS03600 0.17 -1.1 756,136 + A4249_RS03600 0.17 -0.5 756,136 + A4249_RS03600 0.17 +0.3 756,136 + A4249_RS03600 0.17 +1.6 756,136 + A4249_RS03600 0.17 -1.2 756,137 - A4249_RS03600 0.17 -0.6 756,137 - A4249_RS03600 0.17 +0.4 756,137 - A4249_RS03600 0.17 -0.3 756,137 - A4249_RS03600 0.17 +0.3 756,137 - A4249_RS03600 0.17 +1.2 756,137 - A4249_RS03600 0.17 -0.3 756,137 - A4249_RS03600 0.17 -0.1 756,137 - A4249_RS03600 0.17 -0.1 756,137 - A4249_RS03600 0.17 -0.2 756,137 - A4249_RS03600 0.17 +0.1 756,592 + A4249_RS03600 0.60 +0.1 757,018 + +0.5 757,019 - +1.5 757,019 - -1.0 757,090 + -0.0 757,090 + -0.2 757,091 - -0.5 757,286 + +0.8 757,286 + +0.2 757,286 + -0.3 757,288 + -0.1 757,288 + +0.8 757,288 + -0.1 757,288 + +0.5 757,288 + +0.5 757,288 + -1.5 757,288 + +1.1 757,288 + -2.0 757,288 + +1.0 757,288 + +1.3 757,288 + -0.0 757,288 + -0.7 757,288 + -0.5 757,288 + -0.9 757,288 + +0.3 757,288 + -1.0 757,288 + -0.1 757,288 + -0.9 757,288 + +0.1 757,288 + +0.1 757,288 + +1.3 757,288 + +0.5 757,288 + +0.0 757,289 - +0.1 757,289 - -0.3 757,289 - +0.5 757,289 - -0.3 757,289 - -1.1 757,289 - +0.2 757,289 - -0.4 757,289 - +0.5 757,289 - +0.5 757,289 - -0.6 757,316 + -2.3 757,316 + +1.3 757,316 + -0.6 757,316 + -0.9 757,316 + -0.9 757,316 + -0.3 757,316 + -0.6 757,316 + -0.2 757,316 + -0.7 757,316 + +0.0 757,316 + +0.1 757,317 - -1.5 757,317 - -1.2 757,566 + A4249_RS03605 0.16 -0.6 757,567 - A4249_RS03605 0.16 +0.5 757,696 + A4249_RS03605 0.21 +1.2 757,696 + A4249_RS03605 0.21 +0.2 757,696 + A4249_RS03605 0.21 -0.4 757,696 + A4249_RS03605 0.21 -0.1 757,800 - A4249_RS03605 0.24 -1.0 757,881 - A4249_RS03605 0.27 +1.7 757,881 - A4249_RS03605 0.27 +0.2 757,961 + A4249_RS03605 0.29 +0.9 757,961 + A4249_RS03605 0.29 +0.1 757,962 - A4249_RS03605 0.30 -0.4 758,018 + A4249_RS03605 0.31 +0.2 758,018 + A4249_RS03605 0.31 +0.8 758,018 + A4249_RS03605 0.31 +0.6 758,019 - A4249_RS03605 0.31 +0.7 758,019 - A4249_RS03605 0.31 +1.0 758,019 - A4249_RS03605 0.31 -0.2 758,019 - A4249_RS03605 0.31 +0.9 758,019 - A4249_RS03605 0.31 -1.5 758,019 - A4249_RS03605 0.31 -1.2 758,019 - A4249_RS03605 0.31 -0.0
Or see this region's nucleotide sequence