Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03505 and A4249_RS03510 overlap by 4 nucleotides A4249_RS03510 and A4249_RS03515 are separated by 76 nucleotides A4249_RS03515 and A4249_RS03520 are separated by 111 nucleotides
A4249_RS03505: A4249_RS03505 - NADH:flavin oxidoreductase/NADH oxidase, at 729,596 to 730,702
_RS03505
A4249_RS03510: A4249_RS03510 - L-dopachrome tautomerase-related protein, at 730,699 to 731,850
_RS03510
A4249_RS03515: A4249_RS03515 - SDR family oxidoreductase, at 731,927 to 732,667
_RS03515
A4249_RS03520: A4249_RS03520 - antibiotic biosynthesis monooxygenase, at 732,779 to 733,072
_RS03520
Position (kb) 730
731
732 Strain fitness (log2 ratio) -2
-1
0
1 at 729.759 kb on + strand, within A4249_RS03505 at 729.759 kb on + strand, within A4249_RS03505 at 729.759 kb on + strand, within A4249_RS03505 at 729.759 kb on + strand, within A4249_RS03505 at 729.760 kb on - strand, within A4249_RS03505 at 729.760 kb on - strand, within A4249_RS03505 at 729.797 kb on + strand, within A4249_RS03505 at 729.798 kb on - strand, within A4249_RS03505 at 729.798 kb on - strand, within A4249_RS03505 at 729.798 kb on - strand, within A4249_RS03505 at 729.798 kb on - strand, within A4249_RS03505 at 729.815 kb on + strand, within A4249_RS03505 at 729.815 kb on + strand, within A4249_RS03505 at 729.816 kb on - strand, within A4249_RS03505 at 729.816 kb on - strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.142 kb on + strand, within A4249_RS03505 at 730.143 kb on - strand, within A4249_RS03505 at 730.143 kb on - strand, within A4249_RS03505 at 730.143 kb on - strand, within A4249_RS03505 at 730.194 kb on - strand, within A4249_RS03505 at 730.436 kb on + strand, within A4249_RS03505 at 730.437 kb on - strand, within A4249_RS03505 at 730.646 kb on + strand at 730.646 kb on + strand at 730.646 kb on + strand at 730.646 kb on + strand at 730.646 kb on + strand at 730.646 kb on + strand at 730.646 kb on + strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.647 kb on - strand at 730.937 kb on - strand, within A4249_RS03510 at 731.167 kb on + strand, within A4249_RS03510 at 731.167 kb on + strand, within A4249_RS03510 at 731.167 kb on + strand, within A4249_RS03510 at 731.167 kb on + strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.168 kb on - strand, within A4249_RS03510 at 731.218 kb on + strand, within A4249_RS03510 at 731.218 kb on + strand, within A4249_RS03510 at 731.218 kb on + strand, within A4249_RS03510 at 731.219 kb on - strand, within A4249_RS03510 at 731.219 kb on - strand, within A4249_RS03510 at 731.219 kb on - strand, within A4249_RS03510 at 731.219 kb on - strand, within A4249_RS03510 at 731.219 kb on - strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.446 kb on + strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.447 kb on - strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.449 kb on + strand, within A4249_RS03510 at 731.450 kb on - strand, within A4249_RS03510 at 731.614 kb on + strand, within A4249_RS03510 at 731.725 kb on + strand, within A4249_RS03510 at 731.726 kb on - strand, within A4249_RS03510 at 731.726 kb on - strand, within A4249_RS03510 at 731.726 kb on - strand, within A4249_RS03510 at 731.726 kb on - strand, within A4249_RS03510 at 731.726 kb on - strand, within A4249_RS03510 at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.938 kb on + strand at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.103 kb on + strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.104 kb on - strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.107 kb on + strand, within A4249_RS03515 at 732.108 kb on - strand, within A4249_RS03515 at 732.108 kb on - strand, within A4249_RS03515 at 732.108 kb on - strand, within A4249_RS03515 at 732.280 kb on + strand, within A4249_RS03515 at 732.280 kb on + strand, within A4249_RS03515 at 732.281 kb on - strand, within A4249_RS03515 at 732.281 kb on - strand, within A4249_RS03515 at 732.281 kb on - strand, within A4249_RS03515 at 732.281 kb on - strand, within A4249_RS03515 at 732.287 kb on + strand, within A4249_RS03515 at 732.287 kb on + strand, within A4249_RS03515 at 732.395 kb on + strand, within A4249_RS03515 at 732.396 kb on - strand, within A4249_RS03515 at 732.396 kb on - strand, within A4249_RS03515 at 732.469 kb on + strand, within A4249_RS03515 at 732.469 kb on + strand, within A4249_RS03515 at 732.469 kb on + strand, within A4249_RS03515 at 732.470 kb on - strand, within A4249_RS03515 at 732.470 kb on - strand, within A4249_RS03515 at 732.551 kb on + strand, within A4249_RS03515 at 732.551 kb on + strand, within A4249_RS03515 at 732.552 kb on - strand, within A4249_RS03515 at 732.552 kb on - strand, within A4249_RS03515 at 732.589 kb on + strand, within A4249_RS03515 at 732.590 kb on - strand, within A4249_RS03515 at 732.746 kb on + strand at 732.746 kb on + strand at 732.746 kb on + strand at 732.746 kb on + strand at 732.747 kb on - strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.749 kb on + strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.750 kb on - strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.778 kb on + strand at 732.779 kb on - strand at 732.779 kb on - strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.797 kb on + strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.798 kb on - strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.801 kb on + strand at 732.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 729,759 + A4249_RS03505 0.15 +0.6 729,759 + A4249_RS03505 0.15 +0.4 729,759 + A4249_RS03505 0.15 +0.1 729,759 + A4249_RS03505 0.15 +0.4 729,760 - A4249_RS03505 0.15 -0.7 729,760 - A4249_RS03505 0.15 -0.5 729,797 + A4249_RS03505 0.18 +0.1 729,798 - A4249_RS03505 0.18 +0.1 729,798 - A4249_RS03505 0.18 -0.3 729,798 - A4249_RS03505 0.18 -0.3 729,798 - A4249_RS03505 0.18 -2.3 729,815 + A4249_RS03505 0.20 -0.3 729,815 + A4249_RS03505 0.20 +0.1 729,816 - A4249_RS03505 0.20 +0.7 729,816 - A4249_RS03505 0.20 -1.1 730,142 + A4249_RS03505 0.49 -0.1 730,142 + A4249_RS03505 0.49 -1.0 730,142 + A4249_RS03505 0.49 -0.3 730,142 + A4249_RS03505 0.49 +0.7 730,142 + A4249_RS03505 0.49 -0.4 730,142 + A4249_RS03505 0.49 +0.2 730,143 - A4249_RS03505 0.49 -0.1 730,143 - A4249_RS03505 0.49 -1.8 730,143 - A4249_RS03505 0.49 -0.1 730,194 - A4249_RS03505 0.54 +0.5 730,436 + A4249_RS03505 0.76 +0.3 730,437 - A4249_RS03505 0.76 -0.3 730,646 + +0.7 730,646 + +0.1 730,646 + -1.9 730,646 + -0.5 730,646 + -2.5 730,646 + -0.5 730,646 + +0.2 730,647 - -0.2 730,647 - -1.0 730,647 - -0.3 730,647 - +0.9 730,647 - -1.0 730,937 - A4249_RS03510 0.21 +0.6 731,167 + A4249_RS03510 0.41 -0.9 731,167 + A4249_RS03510 0.41 +0.2 731,167 + A4249_RS03510 0.41 -0.5 731,167 + A4249_RS03510 0.41 -0.5 731,168 - A4249_RS03510 0.41 +0.5 731,168 - A4249_RS03510 0.41 -1.3 731,168 - A4249_RS03510 0.41 -0.9 731,168 - A4249_RS03510 0.41 -0.4 731,168 - A4249_RS03510 0.41 -0.3 731,168 - A4249_RS03510 0.41 -1.4 731,168 - A4249_RS03510 0.41 -0.3 731,218 + A4249_RS03510 0.45 -0.1 731,218 + A4249_RS03510 0.45 -0.9 731,218 + A4249_RS03510 0.45 +0.4 731,219 - A4249_RS03510 0.45 -0.9 731,219 - A4249_RS03510 0.45 -0.6 731,219 - A4249_RS03510 0.45 -0.6 731,219 - A4249_RS03510 0.45 -0.9 731,219 - A4249_RS03510 0.45 +0.2 731,446 + A4249_RS03510 0.65 +0.4 731,446 + A4249_RS03510 0.65 -1.0 731,446 + A4249_RS03510 0.65 -0.9 731,446 + A4249_RS03510 0.65 -0.8 731,446 + A4249_RS03510 0.65 -0.2 731,446 + A4249_RS03510 0.65 +0.3 731,446 + A4249_RS03510 0.65 +0.3 731,446 + A4249_RS03510 0.65 +0.7 731,446 + A4249_RS03510 0.65 +1.5 731,447 - A4249_RS03510 0.65 -0.6 731,447 - A4249_RS03510 0.65 -1.8 731,447 - A4249_RS03510 0.65 -1.3 731,447 - A4249_RS03510 0.65 -1.2 731,447 - A4249_RS03510 0.65 -1.2 731,447 - A4249_RS03510 0.65 +1.5 731,447 - A4249_RS03510 0.65 -1.5 731,447 - A4249_RS03510 0.65 -1.1 731,447 - A4249_RS03510 0.65 -0.1 731,447 - A4249_RS03510 0.65 -0.2 731,449 + A4249_RS03510 0.65 +1.2 731,449 + A4249_RS03510 0.65 -0.6 731,449 + A4249_RS03510 0.65 -0.2 731,449 + A4249_RS03510 0.65 -0.7 731,449 + A4249_RS03510 0.65 -0.3 731,449 + A4249_RS03510 0.65 -0.4 731,449 + A4249_RS03510 0.65 +1.2 731,449 + A4249_RS03510 0.65 -0.4 731,450 - A4249_RS03510 0.65 +0.9 731,614 + A4249_RS03510 0.79 +0.7 731,725 + A4249_RS03510 0.89 -1.5 731,726 - A4249_RS03510 0.89 -0.0 731,726 - A4249_RS03510 0.89 -0.4 731,726 - A4249_RS03510 0.89 +1.4 731,726 - A4249_RS03510 0.89 -0.2 731,726 - A4249_RS03510 0.89 -0.7 731,920 + -0.1 731,920 + -0.8 731,920 + -0.3 731,920 + -1.3 731,920 + -1.7 731,920 + -0.3 731,920 + +0.7 731,920 + +1.6 731,920 + -1.6 731,920 + -0.4 731,920 + -0.6 731,920 + +0.5 731,920 + +0.3 731,920 + -0.6 731,920 + +0.9 731,921 - -0.4 731,921 - -0.7 731,921 - +0.2 731,921 - +0.5 731,938 + -0.1 732,103 + A4249_RS03515 0.24 -1.4 732,103 + A4249_RS03515 0.24 +0.3 732,103 + A4249_RS03515 0.24 -1.3 732,103 + A4249_RS03515 0.24 -0.4 732,103 + A4249_RS03515 0.24 +0.5 732,103 + A4249_RS03515 0.24 -0.7 732,103 + A4249_RS03515 0.24 -0.9 732,103 + A4249_RS03515 0.24 +1.5 732,103 + A4249_RS03515 0.24 +0.2 732,103 + A4249_RS03515 0.24 +0.2 732,104 - A4249_RS03515 0.24 +0.5 732,104 - A4249_RS03515 0.24 +1.0 732,104 - A4249_RS03515 0.24 -1.0 732,104 - A4249_RS03515 0.24 +0.3 732,104 - A4249_RS03515 0.24 -0.8 732,104 - A4249_RS03515 0.24 -0.8 732,104 - A4249_RS03515 0.24 -1.6 732,104 - A4249_RS03515 0.24 -0.6 732,107 + A4249_RS03515 0.24 -0.4 732,107 + A4249_RS03515 0.24 -1.1 732,107 + A4249_RS03515 0.24 +0.6 732,107 + A4249_RS03515 0.24 -1.4 732,107 + A4249_RS03515 0.24 +0.5 732,107 + A4249_RS03515 0.24 +0.0 732,107 + A4249_RS03515 0.24 +0.4 732,108 - A4249_RS03515 0.24 -0.8 732,108 - A4249_RS03515 0.24 -0.2 732,108 - A4249_RS03515 0.24 -0.6 732,280 + A4249_RS03515 0.48 +0.8 732,280 + A4249_RS03515 0.48 -1.6 732,281 - A4249_RS03515 0.48 -0.6 732,281 - A4249_RS03515 0.48 +1.0 732,281 - A4249_RS03515 0.48 +0.1 732,281 - A4249_RS03515 0.48 -0.1 732,287 + A4249_RS03515 0.49 +0.8 732,287 + A4249_RS03515 0.49 +0.1 732,395 + A4249_RS03515 0.63 +1.3 732,396 - A4249_RS03515 0.63 +1.6 732,396 - A4249_RS03515 0.63 +0.4 732,469 + A4249_RS03515 0.73 -0.2 732,469 + A4249_RS03515 0.73 -1.3 732,469 + A4249_RS03515 0.73 +0.2 732,470 - A4249_RS03515 0.73 -1.1 732,470 - A4249_RS03515 0.73 +0.3 732,551 + A4249_RS03515 0.84 +0.4 732,551 + A4249_RS03515 0.84 -0.5 732,552 - A4249_RS03515 0.84 -0.2 732,552 - A4249_RS03515 0.84 +0.5 732,589 + A4249_RS03515 0.89 -0.3 732,590 - A4249_RS03515 0.89 -0.5 732,746 + +0.9 732,746 + +0.3 732,746 + -0.2 732,746 + +0.7 732,747 - -0.5 732,749 + +0.3 732,749 + -0.5 732,749 + +1.3 732,749 + -0.5 732,749 + -0.0 732,749 + +1.2 732,749 + -0.3 732,749 + +0.4 732,749 + -1.5 732,749 + -1.0 732,749 + -0.5 732,749 + -0.2 732,749 + -0.8 732,749 + +0.3 732,749 + -0.2 732,750 - -0.5 732,750 - +0.2 732,750 - -0.4 732,750 - -0.9 732,750 - -0.8 732,750 - -1.1 732,750 - +0.3 732,750 - -0.4 732,750 - -1.2 732,750 - +0.7 732,750 - +0.2 732,750 - -0.5 732,778 + +0.4 732,778 + -1.0 732,778 + -1.3 732,778 + +1.3 732,778 + +0.3 732,778 + +0.4 732,778 + +0.7 732,778 + +0.3 732,778 + -0.8 732,779 - +1.3 732,779 - -0.7 732,797 + -0.5 732,797 + +0.4 732,797 + -0.9 732,797 + +0.9 732,797 + -1.0 732,797 + +0.3 732,797 + +0.2 732,797 + +0.5 732,797 + +0.5 732,798 - -0.2 732,798 - -1.1 732,798 - -1.3 732,798 - -0.3 732,798 - -0.3 732,798 - +0.1 732,798 - +0.1 732,798 - +1.0 732,798 - +0.1 732,798 - +0.5 732,798 - +0.4 732,798 - -1.0 732,801 + +0.6 732,801 + +0.3 732,801 + +0.2 732,801 + -0.5 732,801 + +1.1 732,801 + -0.9 732,801 + -1.1 732,802 - -0.2
Or see this region's nucleotide sequence