Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02895 and A4249_RS02900 are separated by 112 nucleotides A4249_RS02900 and A4249_RS02905 are separated by 3 nucleotides A4249_RS02905 and A4249_RS02910 are separated by 0 nucleotides A4249_RS02910 and A4249_RS02915 are separated by 63 nucleotides
A4249_RS02895: A4249_RS02895 - PAS domain-containing protein, at 614,817 to 617,246
_RS02895
A4249_RS02900: A4249_RS02900 - hypothetical protein, at 617,359 to 617,898
_RS02900
A4249_RS02905: A4249_RS02905 - tRNA guanosine(34) transglycosylase Tgt, at 617,902 to 619,014
_RS02905
A4249_RS02910: A4249_RS02910 - hypothetical protein, at 619,015 to 619,488
_RS02910
A4249_RS02915: A4249_RS02915 - methyltransferase, at 619,552 to 620,310
_RS02915
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -1
0
1
2 at 616.957 kb on + strand, within A4249_RS02895 at 616.957 kb on + strand, within A4249_RS02895 at 616.957 kb on + strand, within A4249_RS02895 at 616.957 kb on + strand, within A4249_RS02895 at 616.957 kb on + strand, within A4249_RS02895 at 616.958 kb on - strand, within A4249_RS02895 at 617.161 kb on - strand at 617.183 kb on + strand at 617.184 kb on - strand at 617.239 kb on + strand at 617.239 kb on + strand at 617.239 kb on + strand at 617.239 kb on + strand at 617.240 kb on - strand at 617.240 kb on - strand at 617.240 kb on - strand at 617.240 kb on - strand at 617.240 kb on - strand at 617.240 kb on - strand at 617.278 kb on + strand at 617.326 kb on - strand at 617.348 kb on + strand at 617.349 kb on - strand at 617.546 kb on - strand, within A4249_RS02900 at 617.653 kb on + strand, within A4249_RS02900 at 617.653 kb on + strand, within A4249_RS02900 at 617.653 kb on + strand, within A4249_RS02900 at 617.653 kb on + strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.654 kb on - strand, within A4249_RS02900 at 617.727 kb on + strand, within A4249_RS02900 at 617.728 kb on - strand, within A4249_RS02900 at 617.728 kb on - strand, within A4249_RS02900 at 618.280 kb on + strand, within A4249_RS02905 at 618.281 kb on - strand, within A4249_RS02905 at 618.281 kb on - strand, within A4249_RS02905 at 618.284 kb on + strand, within A4249_RS02905 at 618.478 kb on - strand, within A4249_RS02905 at 618.833 kb on + strand, within A4249_RS02905 at 618.833 kb on + strand, within A4249_RS02905 at 619.079 kb on + strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.080 kb on - strand, within A4249_RS02910 at 619.373 kb on + strand, within A4249_RS02910 at 619.373 kb on + strand, within A4249_RS02910 at 619.373 kb on + strand, within A4249_RS02910 at 619.373 kb on + strand, within A4249_RS02910 at 619.373 kb on + strand, within A4249_RS02910 at 619.374 kb on - strand, within A4249_RS02910 at 619.374 kb on - strand, within A4249_RS02910 at 619.522 kb on + strand at 619.522 kb on + strand at 619.522 kb on + strand at 619.523 kb on - strand at 619.523 kb on - strand at 619.523 kb on - strand at 620.011 kb on - strand, within A4249_RS02915
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 616,957 + A4249_RS02895 0.88 +0.5 616,957 + A4249_RS02895 0.88 -0.6 616,957 + A4249_RS02895 0.88 -1.1 616,957 + A4249_RS02895 0.88 -1.5 616,957 + A4249_RS02895 0.88 +0.1 616,958 - A4249_RS02895 0.88 +0.3 617,161 - -0.3 617,183 + -0.5 617,184 - -0.1 617,239 + +0.4 617,239 + +1.0 617,239 + -0.2 617,239 + +0.6 617,240 - +0.3 617,240 - +0.4 617,240 - +0.1 617,240 - -0.7 617,240 - -0.1 617,240 - +0.3 617,278 + +0.5 617,326 - -0.6 617,348 + +0.3 617,349 - +0.6 617,546 - A4249_RS02900 0.35 -0.3 617,653 + A4249_RS02900 0.54 -0.7 617,653 + A4249_RS02900 0.54 -0.7 617,653 + A4249_RS02900 0.54 -1.0 617,653 + A4249_RS02900 0.54 -0.0 617,654 - A4249_RS02900 0.55 -0.3 617,654 - A4249_RS02900 0.55 +0.5 617,654 - A4249_RS02900 0.55 -0.8 617,654 - A4249_RS02900 0.55 +0.9 617,654 - A4249_RS02900 0.55 -0.0 617,654 - A4249_RS02900 0.55 +0.1 617,654 - A4249_RS02900 0.55 -0.2 617,654 - A4249_RS02900 0.55 +1.3 617,654 - A4249_RS02900 0.55 -1.1 617,727 + A4249_RS02900 0.68 -0.4 617,728 - A4249_RS02900 0.68 -0.2 617,728 - A4249_RS02900 0.68 +1.7 618,280 + A4249_RS02905 0.34 +0.3 618,281 - A4249_RS02905 0.34 +1.5 618,281 - A4249_RS02905 0.34 +1.1 618,284 + A4249_RS02905 0.34 +0.1 618,478 - A4249_RS02905 0.52 +0.8 618,833 + A4249_RS02905 0.84 +1.3 618,833 + A4249_RS02905 0.84 +0.3 619,079 + A4249_RS02910 0.14 +2.1 619,080 - A4249_RS02910 0.14 -0.3 619,080 - A4249_RS02910 0.14 -0.1 619,080 - A4249_RS02910 0.14 -0.1 619,080 - A4249_RS02910 0.14 +0.0 619,080 - A4249_RS02910 0.14 -0.8 619,080 - A4249_RS02910 0.14 -0.2 619,373 + A4249_RS02910 0.76 -1.1 619,373 + A4249_RS02910 0.76 +0.3 619,373 + A4249_RS02910 0.76 -0.8 619,373 + A4249_RS02910 0.76 +0.7 619,373 + A4249_RS02910 0.76 -0.2 619,374 - A4249_RS02910 0.76 -0.6 619,374 - A4249_RS02910 0.76 -0.8 619,522 + -0.5 619,522 + -0.9 619,522 + -0.1 619,523 - +1.1 619,523 - -1.0 619,523 - +0.5 620,011 - A4249_RS02915 0.60 +1.2
Or see this region's nucleotide sequence