Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02885 and A4249_RS02890 are separated by 94 nucleotides A4249_RS02890 and A4249_RS02895 are separated by 45 nucleotides
A4249_RS02885: A4249_RS02885 - CaiB/BaiF CoA-transferase family protein, at 613,518 to 614,600
_RS02885
A4249_RS02890: A4249_RS02890 - tRNA-Lys, at 614,695 to 614,771
_RS02890
A4249_RS02895: A4249_RS02895 - PAS domain-containing protein, at 614,817 to 617,246
_RS02895
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.804 kb on + strand, within A4249_RS02885 at 613.804 kb on + strand, within A4249_RS02885 at 613.805 kb on - strand, within A4249_RS02885 at 613.805 kb on - strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.855 kb on + strand, within A4249_RS02885 at 613.856 kb on - strand, within A4249_RS02885 at 613.856 kb on - strand, within A4249_RS02885 at 613.909 kb on + strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.910 kb on - strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.918 kb on + strand, within A4249_RS02885 at 613.919 kb on - strand, within A4249_RS02885 at 614.130 kb on + strand, within A4249_RS02885 at 614.131 kb on - strand, within A4249_RS02885 at 614.131 kb on - strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.200 kb on + strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.201 kb on - strand, within A4249_RS02885 at 614.308 kb on + strand, within A4249_RS02885 at 614.308 kb on + strand, within A4249_RS02885 at 614.309 kb on - strand, within A4249_RS02885 at 614.589 kb on + strand at 614.589 kb on + strand at 614.589 kb on + strand at 614.589 kb on + strand at 614.589 kb on + strand at 614.590 kb on - strand at 614.590 kb on - strand at 614.590 kb on - strand at 614.590 kb on - strand at 614.590 kb on - strand at 614.611 kb on + strand at 614.774 kb on + strand at 614.774 kb on + strand at 614.774 kb on + strand at 614.774 kb on + strand at 614.775 kb on - strand at 614.775 kb on - strand at 614.775 kb on - strand at 614.884 kb on + strand at 614.884 kb on + strand at 614.884 kb on + strand at 614.884 kb on + strand at 614.885 kb on - strand at 614.885 kb on - strand at 614.885 kb on - strand at 615.086 kb on + strand, within A4249_RS02895 at 615.087 kb on - strand, within A4249_RS02895 at 615.093 kb on - strand, within A4249_RS02895 at 615.106 kb on + strand, within A4249_RS02895 at 615.106 kb on + strand, within A4249_RS02895 at 615.106 kb on + strand, within A4249_RS02895 at 615.107 kb on - strand, within A4249_RS02895 at 615.416 kb on - strand, within A4249_RS02895 at 615.416 kb on - strand, within A4249_RS02895 at 615.416 kb on - strand, within A4249_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 613,804 + A4249_RS02885 0.26 +0.5 613,804 + A4249_RS02885 0.26 +1.0 613,805 - A4249_RS02885 0.27 -1.5 613,805 - A4249_RS02885 0.27 +1.2 613,855 + A4249_RS02885 0.31 +0.0 613,855 + A4249_RS02885 0.31 -0.9 613,855 + A4249_RS02885 0.31 -1.6 613,856 - A4249_RS02885 0.31 -0.0 613,856 - A4249_RS02885 0.31 -0.8 613,909 + A4249_RS02885 0.36 +0.1 613,910 - A4249_RS02885 0.36 -0.2 613,910 - A4249_RS02885 0.36 +0.1 613,910 - A4249_RS02885 0.36 +0.9 613,910 - A4249_RS02885 0.36 +0.3 613,910 - A4249_RS02885 0.36 -1.0 613,918 + A4249_RS02885 0.37 +0.1 613,918 + A4249_RS02885 0.37 -0.7 613,918 + A4249_RS02885 0.37 +0.9 613,919 - A4249_RS02885 0.37 +0.7 614,130 + A4249_RS02885 0.57 -1.0 614,131 - A4249_RS02885 0.57 -0.7 614,131 - A4249_RS02885 0.57 -1.2 614,200 + A4249_RS02885 0.63 -0.7 614,200 + A4249_RS02885 0.63 -0.0 614,200 + A4249_RS02885 0.63 -0.2 614,200 + A4249_RS02885 0.63 -2.1 614,200 + A4249_RS02885 0.63 -0.2 614,200 + A4249_RS02885 0.63 -2.0 614,200 + A4249_RS02885 0.63 -0.6 614,200 + A4249_RS02885 0.63 -0.0 614,201 - A4249_RS02885 0.63 +0.8 614,201 - A4249_RS02885 0.63 -0.6 614,201 - A4249_RS02885 0.63 +0.4 614,201 - A4249_RS02885 0.63 -0.6 614,201 - A4249_RS02885 0.63 -1.3 614,201 - A4249_RS02885 0.63 -0.8 614,201 - A4249_RS02885 0.63 +0.7 614,201 - A4249_RS02885 0.63 -0.2 614,308 + A4249_RS02885 0.73 +0.8 614,308 + A4249_RS02885 0.73 -0.8 614,309 - A4249_RS02885 0.73 -0.8 614,589 + +0.3 614,589 + -0.6 614,589 + +0.3 614,589 + -0.3 614,589 + +1.2 614,590 - +0.3 614,590 - +0.0 614,590 - -0.5 614,590 - +0.6 614,590 - +0.2 614,611 + +0.4 614,774 + -1.1 614,774 + -0.7 614,774 + +0.1 614,774 + -1.8 614,775 - -1.6 614,775 - -0.7 614,775 - -0.2 614,884 + -0.9 614,884 + +1.7 614,884 + +0.7 614,884 + +1.7 614,885 - +0.9 614,885 - +0.3 614,885 - -2.8 615,086 + A4249_RS02895 0.11 -0.3 615,087 - A4249_RS02895 0.11 -0.2 615,093 - A4249_RS02895 0.11 +0.3 615,106 + A4249_RS02895 0.12 +0.6 615,106 + A4249_RS02895 0.12 -1.1 615,106 + A4249_RS02895 0.12 -0.4 615,107 - A4249_RS02895 0.12 +1.9 615,416 - A4249_RS02895 0.25 +0.8 615,416 - A4249_RS02895 0.25 -0.9 615,416 - A4249_RS02895 0.25 -1.0
Or see this region's nucleotide sequence