Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS02175 and A4249_RS02180 overlap by 4 nucleotides A4249_RS02180 and A4249_RS02185 are separated by 32 nucleotides A4249_RS02185 and A4249_RS02190 are separated by 81 nucleotides
A4249_RS02175: A4249_RS02175 - cbb3-type cytochrome c oxidase subunit I, at 456,750 to 459,296
_RS02175
A4249_RS02180: A4249_RS02180 - hypothetical protein, at 459,293 to 459,604
_RS02180
A4249_RS02185: A4249_RS02185 - polysaccharide biosynthesis tyrosine autokinase, at 459,637 to 461,829
_RS02185
A4249_RS02190: A4249_RS02190 - outer membrane beta-barrel protein, at 461,911 to 463,194
_RS02190
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.643 kb on + strand, within A4249_RS02175 at 458.643 kb on + strand, within A4249_RS02175 at 458.643 kb on + strand, within A4249_RS02175 at 458.643 kb on + strand, within A4249_RS02175 at 458.643 kb on + strand, within A4249_RS02175 at 458.643 kb on + strand, within A4249_RS02175 at 458.644 kb on - strand, within A4249_RS02175 at 458.644 kb on - strand, within A4249_RS02175 at 458.644 kb on - strand, within A4249_RS02175 at 458.644 kb on - strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.730 kb on + strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.731 kb on - strand, within A4249_RS02175 at 458.820 kb on + strand, within A4249_RS02175 at 458.820 kb on + strand, within A4249_RS02175 at 458.820 kb on + strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 458.821 kb on - strand, within A4249_RS02175 at 459.093 kb on + strand at 459.093 kb on + strand at 459.093 kb on + strand at 459.094 kb on - strand at 459.094 kb on - strand at 459.094 kb on - strand at 459.094 kb on - strand at 459.356 kb on + strand, within A4249_RS02180 at 459.356 kb on + strand, within A4249_RS02180 at 459.356 kb on + strand, within A4249_RS02180 at 459.356 kb on + strand, within A4249_RS02180 at 459.356 kb on + strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.357 kb on - strand, within A4249_RS02180 at 459.459 kb on + strand, within A4249_RS02180 at 459.459 kb on + strand, within A4249_RS02180 at 459.460 kb on - strand, within A4249_RS02180 at 459.460 kb on - strand, within A4249_RS02180 at 459.595 kb on + strand at 459.595 kb on + strand at 459.595 kb on + strand at 459.596 kb on - strand at 459.628 kb on + strand at 459.647 kb on + strand at 459.647 kb on + strand at 459.647 kb on + strand at 459.647 kb on + strand at 459.647 kb on + strand at 459.647 kb on + strand at 459.648 kb on - strand at 459.648 kb on - strand at 459.648 kb on - strand at 459.648 kb on - strand at 459.648 kb on - strand at 459.650 kb on + strand at 459.650 kb on + strand at 459.650 kb on + strand at 459.650 kb on + strand at 459.650 kb on + strand at 459.651 kb on - strand at 459.675 kb on - strand at 459.675 kb on - strand at 459.690 kb on - strand at 459.690 kb on - strand at 459.694 kb on + strand at 459.694 kb on + strand at 459.694 kb on + strand at 459.694 kb on + strand at 459.694 kb on + strand at 459.695 kb on - strand at 459.848 kb on - strand at 459.848 kb on - strand at 460.145 kb on - strand, within A4249_RS02185 at 460.185 kb on + strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.186 kb on - strand, within A4249_RS02185 at 460.643 kb on + strand, within A4249_RS02185 at 461.078 kb on + strand, within A4249_RS02185 at 461.078 kb on + strand, within A4249_RS02185 at 461.078 kb on + strand, within A4249_RS02185 at 461.079 kb on - strand, within A4249_RS02185 at 461.079 kb on - strand, within A4249_RS02185 at 461.079 kb on - strand, within A4249_RS02185 at 461.264 kb on + strand, within A4249_RS02185 at 461.339 kb on + strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.340 kb on - strand, within A4249_RS02185 at 461.497 kb on + strand, within A4249_RS02185 at 461.497 kb on + strand, within A4249_RS02185 at 461.498 kb on - strand, within A4249_RS02185 at 461.498 kb on - strand, within A4249_RS02185 at 461.631 kb on + strand at 461.631 kb on + strand at 461.632 kb on - strand at 461.632 kb on - strand at 461.632 kb on - strand at 461.658 kb on + strand at 461.658 kb on + strand at 461.659 kb on - strand at 461.659 kb on - strand at 461.660 kb on + strand at 461.660 kb on + strand at 461.660 kb on + strand at 461.660 kb on + strand at 461.660 kb on + strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.661 kb on - strand at 461.872 kb on + strand at 461.872 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.954 kb on + strand at 461.955 kb on - strand at 461.955 kb on - strand at 461.955 kb on - strand at 461.955 kb on - strand at 461.955 kb on - strand at 461.955 kb on - strand at 461.996 kb on + strand at 461.996 kb on + strand at 461.996 kb on + strand at 461.997 kb on - strand at 461.997 kb on - strand at 461.997 kb on - strand at 462.092 kb on + strand, within A4249_RS02190 at 462.092 kb on + strand, within A4249_RS02190 at 462.092 kb on + strand, within A4249_RS02190 at 462.092 kb on + strand, within A4249_RS02190 at 462.093 kb on - strand, within A4249_RS02190 at 462.335 kb on + strand, within A4249_RS02190 at 462.335 kb on + strand, within A4249_RS02190 at 462.335 kb on + strand, within A4249_RS02190 at 462.336 kb on - strand, within A4249_RS02190 at 462.336 kb on - strand, within A4249_RS02190 at 462.336 kb on - strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.370 kb on + strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.371 kb on - strand, within A4249_RS02190 at 462.444 kb on - strand, within A4249_RS02190 at 462.500 kb on + strand, within A4249_RS02190 at 462.501 kb on - strand, within A4249_RS02190 at 462.593 kb on + strand, within A4249_RS02190 at 462.593 kb on + strand, within A4249_RS02190 at 462.593 kb on + strand, within A4249_RS02190 at 462.594 kb on - strand, within A4249_RS02190 at 462.740 kb on + strand, within A4249_RS02190 at 462.740 kb on + strand, within A4249_RS02190 at 462.741 kb on - strand, within A4249_RS02190 at 462.741 kb on - strand, within A4249_RS02190 at 462.741 kb on - strand, within A4249_RS02190 at 462.741 kb on - strand, within A4249_RS02190
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 458,643 + A4249_RS02175 0.74 +0.2 458,643 + A4249_RS02175 0.74 -0.1 458,643 + A4249_RS02175 0.74 +0.6 458,643 + A4249_RS02175 0.74 +0.3 458,643 + A4249_RS02175 0.74 -0.9 458,643 + A4249_RS02175 0.74 -0.6 458,644 - A4249_RS02175 0.74 +0.3 458,644 - A4249_RS02175 0.74 -0.7 458,644 - A4249_RS02175 0.74 -1.2 458,644 - A4249_RS02175 0.74 -0.3 458,730 + A4249_RS02175 0.78 -0.3 458,730 + A4249_RS02175 0.78 -1.7 458,730 + A4249_RS02175 0.78 +1.4 458,730 + A4249_RS02175 0.78 -0.1 458,730 + A4249_RS02175 0.78 -0.7 458,730 + A4249_RS02175 0.78 +0.5 458,730 + A4249_RS02175 0.78 -1.4 458,730 + A4249_RS02175 0.78 +0.4 458,731 - A4249_RS02175 0.78 +0.3 458,731 - A4249_RS02175 0.78 -0.1 458,731 - A4249_RS02175 0.78 +0.3 458,731 - A4249_RS02175 0.78 -0.5 458,731 - A4249_RS02175 0.78 -0.2 458,731 - A4249_RS02175 0.78 +0.5 458,820 + A4249_RS02175 0.81 -0.5 458,820 + A4249_RS02175 0.81 -1.3 458,820 + A4249_RS02175 0.81 +0.0 458,821 - A4249_RS02175 0.81 -0.5 458,821 - A4249_RS02175 0.81 +0.3 458,821 - A4249_RS02175 0.81 +1.1 458,821 - A4249_RS02175 0.81 -1.7 458,821 - A4249_RS02175 0.81 -0.1 458,821 - A4249_RS02175 0.81 -0.5 459,093 + +0.3 459,093 + -0.6 459,093 + -0.3 459,094 - -0.5 459,094 - -0.1 459,094 - -0.2 459,094 - -0.7 459,356 + A4249_RS02180 0.20 -1.1 459,356 + A4249_RS02180 0.20 +0.1 459,356 + A4249_RS02180 0.20 +1.4 459,356 + A4249_RS02180 0.20 -0.8 459,356 + A4249_RS02180 0.20 -0.4 459,357 - A4249_RS02180 0.21 -0.5 459,357 - A4249_RS02180 0.21 -2.6 459,357 - A4249_RS02180 0.21 -1.9 459,357 - A4249_RS02180 0.21 +0.5 459,357 - A4249_RS02180 0.21 -0.0 459,357 - A4249_RS02180 0.21 -0.6 459,357 - A4249_RS02180 0.21 +0.5 459,357 - A4249_RS02180 0.21 -0.1 459,459 + A4249_RS02180 0.53 -0.2 459,459 + A4249_RS02180 0.53 +0.1 459,460 - A4249_RS02180 0.54 +0.5 459,460 - A4249_RS02180 0.54 +0.6 459,595 + -0.6 459,595 + +0.2 459,595 + -0.6 459,596 - -0.5 459,628 + +1.6 459,647 + -0.1 459,647 + +0.8 459,647 + -2.1 459,647 + -0.2 459,647 + -1.3 459,647 + -0.9 459,648 - +0.1 459,648 - -0.8 459,648 - +1.3 459,648 - +0.4 459,648 - +0.3 459,650 + -0.5 459,650 + +0.2 459,650 + -0.1 459,650 + +1.0 459,650 + -1.3 459,651 - -0.9 459,675 - -0.4 459,675 - -0.7 459,690 - +0.5 459,690 - -0.5 459,694 + +0.5 459,694 + -0.6 459,694 + -0.0 459,694 + +0.9 459,694 + -1.5 459,695 - -0.5 459,848 - +0.6 459,848 - -0.6 460,145 - A4249_RS02185 0.23 +0.8 460,185 + A4249_RS02185 0.25 +1.7 460,186 - A4249_RS02185 0.25 +0.8 460,186 - A4249_RS02185 0.25 -0.3 460,186 - A4249_RS02185 0.25 -0.3 460,186 - A4249_RS02185 0.25 -0.9 460,186 - A4249_RS02185 0.25 -1.5 460,186 - A4249_RS02185 0.25 -1.5 460,643 + A4249_RS02185 0.46 +1.1 461,078 + A4249_RS02185 0.66 +0.6 461,078 + A4249_RS02185 0.66 +1.4 461,078 + A4249_RS02185 0.66 -0.0 461,079 - A4249_RS02185 0.66 -0.9 461,079 - A4249_RS02185 0.66 -0.7 461,079 - A4249_RS02185 0.66 +0.0 461,264 + A4249_RS02185 0.74 -1.5 461,339 + A4249_RS02185 0.78 -0.3 461,340 - A4249_RS02185 0.78 -0.1 461,340 - A4249_RS02185 0.78 -1.2 461,340 - A4249_RS02185 0.78 -1.0 461,340 - A4249_RS02185 0.78 -0.7 461,340 - A4249_RS02185 0.78 +0.9 461,340 - A4249_RS02185 0.78 +0.0 461,497 + A4249_RS02185 0.85 +1.3 461,497 + A4249_RS02185 0.85 -0.4 461,498 - A4249_RS02185 0.85 +0.1 461,498 - A4249_RS02185 0.85 +0.9 461,631 + -0.6 461,631 + +0.9 461,632 - +1.7 461,632 - -0.2 461,632 - -0.3 461,658 + +0.5 461,658 + +0.5 461,659 - -0.5 461,659 - -0.4 461,660 + +0.4 461,660 + +1.2 461,660 + -1.1 461,660 + +1.4 461,660 + +0.3 461,661 - +0.4 461,661 - +0.8 461,661 - -2.2 461,661 - -0.4 461,661 - +1.5 461,661 - -0.1 461,661 - -1.3 461,661 - -1.3 461,872 + +0.9 461,872 + -0.7 461,954 + +0.2 461,954 + +0.1 461,954 + +1.1 461,954 + -0.5 461,954 + +0.2 461,954 + +0.1 461,954 + +0.6 461,954 + -1.1 461,954 + -0.5 461,954 + -0.2 461,954 + -0.8 461,955 - +1.1 461,955 - -0.1 461,955 - -0.8 461,955 - +0.8 461,955 - -0.9 461,955 - +0.3 461,996 + +0.5 461,996 + -0.0 461,996 + +1.0 461,997 - -0.4 461,997 - +0.8 461,997 - +0.5 462,092 + A4249_RS02190 0.14 -0.4 462,092 + A4249_RS02190 0.14 +0.0 462,092 + A4249_RS02190 0.14 -0.0 462,092 + A4249_RS02190 0.14 -1.1 462,093 - A4249_RS02190 0.14 +0.9 462,335 + A4249_RS02190 0.33 +0.3 462,335 + A4249_RS02190 0.33 +0.8 462,335 + A4249_RS02190 0.33 +0.9 462,336 - A4249_RS02190 0.33 -0.5 462,336 - A4249_RS02190 0.33 +0.6 462,336 - A4249_RS02190 0.33 -0.4 462,370 + A4249_RS02190 0.36 +0.1 462,370 + A4249_RS02190 0.36 +2.1 462,370 + A4249_RS02190 0.36 +0.1 462,370 + A4249_RS02190 0.36 -0.2 462,370 + A4249_RS02190 0.36 +1.4 462,370 + A4249_RS02190 0.36 +0.4 462,370 + A4249_RS02190 0.36 +0.2 462,370 + A4249_RS02190 0.36 -0.4 462,371 - A4249_RS02190 0.36 +0.0 462,371 - A4249_RS02190 0.36 +0.7 462,371 - A4249_RS02190 0.36 +1.0 462,371 - A4249_RS02190 0.36 -0.4 462,371 - A4249_RS02190 0.36 +0.9 462,371 - A4249_RS02190 0.36 -0.5 462,371 - A4249_RS02190 0.36 -0.2 462,371 - A4249_RS02190 0.36 -0.5 462,371 - A4249_RS02190 0.36 -0.3 462,371 - A4249_RS02190 0.36 -0.8 462,444 - A4249_RS02190 0.42 +0.8 462,500 + A4249_RS02190 0.46 -0.0 462,501 - A4249_RS02190 0.46 +0.0 462,593 + A4249_RS02190 0.53 -1.1 462,593 + A4249_RS02190 0.53 -1.1 462,593 + A4249_RS02190 0.53 -0.8 462,594 - A4249_RS02190 0.53 -0.4 462,740 + A4249_RS02190 0.65 -0.2 462,740 + A4249_RS02190 0.65 -0.5 462,741 - A4249_RS02190 0.65 -0.4 462,741 - A4249_RS02190 0.65 -0.9 462,741 - A4249_RS02190 0.65 +0.0 462,741 - A4249_RS02190 0.65 -1.5
Or see this region's nucleotide sequence