Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01880 and A4249_RS01885 are separated by 41 nucleotides A4249_RS01885 and A4249_RS01890 overlap by 4 nucleotides A4249_RS01890 and A4249_RS01895 are separated by 2 nucleotides
A4249_RS01880: A4249_RS01880 - TrbG/VirB9 family P-type conjugative transfer protein, at 372,115 to 372,756
_RS01880
A4249_RS01885: A4249_RS01885 - type IV secretion system protein, at 372,798 to 373,574
_RS01885
A4249_RS01890: A4249_RS01890 - type IV secretion system protein, at 373,571 to 374,806
_RS01890
A4249_RS01895: A4249_RS01895 - VirB4 family type IV secretion/conjugal transfer ATPase, at 374,809 to 377,181
_RS01895
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.644 kb on + strand, within A4249_RS01880 at 372.644 kb on + strand, within A4249_RS01880 at 372.644 kb on + strand, within A4249_RS01880 at 372.645 kb on - strand, within A4249_RS01880 at 372.679 kb on - strand, within A4249_RS01880 at 372.686 kb on + strand, within A4249_RS01880 at 372.687 kb on - strand, within A4249_RS01880 at 372.788 kb on - strand at 372.788 kb on - strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.872 kb on + strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.873 kb on - strand at 372.919 kb on + strand, within A4249_RS01885 at 372.919 kb on + strand, within A4249_RS01885 at 372.920 kb on - strand, within A4249_RS01885 at 372.991 kb on + strand, within A4249_RS01885 at 372.991 kb on + strand, within A4249_RS01885 at 373.135 kb on + strand, within A4249_RS01885 at 373.183 kb on + strand, within A4249_RS01885 at 373.184 kb on - strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.228 kb on + strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.229 kb on - strand, within A4249_RS01885 at 373.276 kb on + strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.277 kb on - strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.384 kb on + strand, within A4249_RS01885 at 373.538 kb on - strand at 373.540 kb on + strand at 373.540 kb on + strand at 373.540 kb on + strand at 373.541 kb on - strand at 373.541 kb on - strand at 373.541 kb on - strand at 373.588 kb on + strand at 373.589 kb on - strand at 373.708 kb on + strand, within A4249_RS01890 at 373.708 kb on + strand, within A4249_RS01890 at 373.708 kb on + strand, within A4249_RS01890 at 373.724 kb on - strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890 at 373.756 kb on + strand, within A4249_RS01890 at 373.757 kb on - strand, within A4249_RS01890 at 373.896 kb on + strand, within A4249_RS01890 at 373.897 kb on - strand, within A4249_RS01890 at 373.897 kb on - strand, within A4249_RS01890 at 373.897 kb on - strand, within A4249_RS01890 at 373.916 kb on - strand, within A4249_RS01890 at 374.514 kb on + strand, within A4249_RS01890 at 374.515 kb on - strand, within A4249_RS01890 at 374.515 kb on - strand, within A4249_RS01890 at 374.515 kb on - strand, within A4249_RS01890 at 374.515 kb on - strand, within A4249_RS01890 at 374.527 kb on + strand, within A4249_RS01890 at 374.527 kb on + strand, within A4249_RS01890 at 374.527 kb on + strand, within A4249_RS01890 at 374.527 kb on + strand, within A4249_RS01890 at 374.527 kb on + strand, within A4249_RS01890 at 374.528 kb on - strand, within A4249_RS01890 at 374.528 kb on - strand, within A4249_RS01890 at 374.528 kb on - strand, within A4249_RS01890 at 374.528 kb on - strand, within A4249_RS01890 at 374.529 kb on + strand, within A4249_RS01890 at 374.529 kb on + strand, within A4249_RS01890 at 374.529 kb on + strand, within A4249_RS01890 at 374.529 kb on + strand, within A4249_RS01890 at 374.529 kb on + strand, within A4249_RS01890 at 374.530 kb on - strand, within A4249_RS01890 at 374.530 kb on - strand, within A4249_RS01890 at 374.530 kb on - strand, within A4249_RS01890 at 374.530 kb on - strand, within A4249_RS01890 at 374.530 kb on - strand, within A4249_RS01890 at 374.561 kb on + strand, within A4249_RS01890 at 374.561 kb on + strand, within A4249_RS01890 at 374.562 kb on - strand, within A4249_RS01890 at 374.709 kb on + strand at 374.709 kb on + strand at 374.710 kb on - strand at 374.710 kb on - strand at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.056 kb on + strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.057 kb on - strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.317 kb on + strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.318 kb on - strand, within A4249_RS01895 at 375.523 kb on + strand, within A4249_RS01895 at 375.523 kb on + strand, within A4249_RS01895 at 375.523 kb on + strand, within A4249_RS01895 at 375.524 kb on - strand, within A4249_RS01895 at 375.524 kb on - strand, within A4249_RS01895 at 375.524 kb on - strand, within A4249_RS01895 at 375.654 kb on + strand, within A4249_RS01895 at 375.654 kb on + strand, within A4249_RS01895 at 375.710 kb on + strand, within A4249_RS01895 at 375.768 kb on + strand, within A4249_RS01895 at 375.768 kb on + strand, within A4249_RS01895 at 375.769 kb on - strand, within A4249_RS01895 at 375.769 kb on - strand, within A4249_RS01895 at 375.769 kb on - strand, within A4249_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 372,644 + A4249_RS01880 0.82 +0.8 372,644 + A4249_RS01880 0.82 -0.4 372,644 + A4249_RS01880 0.82 -1.0 372,645 - A4249_RS01880 0.83 +0.1 372,679 - A4249_RS01880 0.88 -2.5 372,686 + A4249_RS01880 0.89 -0.2 372,687 - A4249_RS01880 0.89 +1.4 372,788 - -0.5 372,788 - +1.9 372,872 + +1.1 372,872 + -0.0 372,872 + +0.0 372,872 + -0.9 372,872 + +0.4 372,873 - -0.0 372,873 - +0.4 372,873 - +2.0 372,873 - +0.6 372,873 - -0.7 372,919 + A4249_RS01885 0.16 -0.4 372,919 + A4249_RS01885 0.16 -1.7 372,920 - A4249_RS01885 0.16 -1.5 372,991 + A4249_RS01885 0.25 -1.7 372,991 + A4249_RS01885 0.25 -0.4 373,135 + A4249_RS01885 0.43 +0.2 373,183 + A4249_RS01885 0.50 +0.5 373,184 - A4249_RS01885 0.50 -0.9 373,228 + A4249_RS01885 0.55 -1.2 373,228 + A4249_RS01885 0.55 +1.2 373,228 + A4249_RS01885 0.55 -1.0 373,229 - A4249_RS01885 0.55 -0.1 373,229 - A4249_RS01885 0.55 -0.0 373,229 - A4249_RS01885 0.55 -0.3 373,229 - A4249_RS01885 0.55 +0.6 373,229 - A4249_RS01885 0.55 -1.1 373,276 + A4249_RS01885 0.62 +0.0 373,277 - A4249_RS01885 0.62 +0.1 373,277 - A4249_RS01885 0.62 -0.1 373,277 - A4249_RS01885 0.62 -0.2 373,277 - A4249_RS01885 0.62 +0.1 373,277 - A4249_RS01885 0.62 +1.3 373,277 - A4249_RS01885 0.62 -1.7 373,384 + A4249_RS01885 0.75 -0.5 373,384 + A4249_RS01885 0.75 +0.5 373,384 + A4249_RS01885 0.75 +0.9 373,384 + A4249_RS01885 0.75 +0.5 373,538 - -2.1 373,540 + -1.3 373,540 + -0.4 373,540 + -0.5 373,541 - +0.9 373,541 - -0.3 373,541 - -0.1 373,588 + +0.2 373,589 - -0.1 373,708 + A4249_RS01890 0.11 +0.0 373,708 + A4249_RS01890 0.11 +1.2 373,708 + A4249_RS01890 0.11 -1.6 373,724 - A4249_RS01890 0.12 -0.8 373,756 + A4249_RS01890 0.15 -0.3 373,756 + A4249_RS01890 0.15 +1.2 373,756 + A4249_RS01890 0.15 -1.1 373,757 - A4249_RS01890 0.15 -0.4 373,896 + A4249_RS01890 0.26 +0.8 373,897 - A4249_RS01890 0.26 +0.0 373,897 - A4249_RS01890 0.26 -0.8 373,897 - A4249_RS01890 0.26 +1.7 373,916 - A4249_RS01890 0.28 +0.2 374,514 + A4249_RS01890 0.76 +1.1 374,515 - A4249_RS01890 0.76 +0.1 374,515 - A4249_RS01890 0.76 -0.9 374,515 - A4249_RS01890 0.76 -0.0 374,515 - A4249_RS01890 0.76 +0.5 374,527 + A4249_RS01890 0.77 +0.8 374,527 + A4249_RS01890 0.77 -1.4 374,527 + A4249_RS01890 0.77 -0.8 374,527 + A4249_RS01890 0.77 +0.7 374,527 + A4249_RS01890 0.77 -0.3 374,528 - A4249_RS01890 0.77 -0.3 374,528 - A4249_RS01890 0.77 +0.9 374,528 - A4249_RS01890 0.77 +0.9 374,528 - A4249_RS01890 0.77 -1.0 374,529 + A4249_RS01890 0.78 -0.7 374,529 + A4249_RS01890 0.78 +0.1 374,529 + A4249_RS01890 0.78 +0.1 374,529 + A4249_RS01890 0.78 +0.1 374,529 + A4249_RS01890 0.78 -0.3 374,530 - A4249_RS01890 0.78 +0.1 374,530 - A4249_RS01890 0.78 -0.3 374,530 - A4249_RS01890 0.78 -1.3 374,530 - A4249_RS01890 0.78 +0.8 374,530 - A4249_RS01890 0.78 -0.3 374,561 + A4249_RS01890 0.80 -1.0 374,561 + A4249_RS01890 0.80 +0.2 374,562 - A4249_RS01890 0.80 -1.5 374,709 + -1.3 374,709 + -0.5 374,710 - +0.1 374,710 - -0.9 375,056 + A4249_RS01895 0.10 -0.8 375,056 + A4249_RS01895 0.10 -0.3 375,056 + A4249_RS01895 0.10 +0.6 375,056 + A4249_RS01895 0.10 +0.0 375,056 + A4249_RS01895 0.10 +0.6 375,056 + A4249_RS01895 0.10 -1.5 375,056 + A4249_RS01895 0.10 +0.2 375,056 + A4249_RS01895 0.10 +0.4 375,056 + A4249_RS01895 0.10 -1.8 375,056 + A4249_RS01895 0.10 -1.2 375,056 + A4249_RS01895 0.10 +0.0 375,056 + A4249_RS01895 0.10 +1.5 375,056 + A4249_RS01895 0.10 +0.7 375,057 - A4249_RS01895 0.10 +0.2 375,057 - A4249_RS01895 0.10 -0.4 375,057 - A4249_RS01895 0.10 -0.3 375,057 - A4249_RS01895 0.10 -0.4 375,057 - A4249_RS01895 0.10 +0.2 375,057 - A4249_RS01895 0.10 +0.3 375,057 - A4249_RS01895 0.10 -1.2 375,057 - A4249_RS01895 0.10 +0.1 375,057 - A4249_RS01895 0.10 -0.1 375,057 - A4249_RS01895 0.10 -0.4 375,317 + A4249_RS01895 0.21 +0.6 375,317 + A4249_RS01895 0.21 +1.1 375,317 + A4249_RS01895 0.21 -0.4 375,317 + A4249_RS01895 0.21 -0.3 375,317 + A4249_RS01895 0.21 +0.4 375,317 + A4249_RS01895 0.21 -1.1 375,317 + A4249_RS01895 0.21 -0.0 375,317 + A4249_RS01895 0.21 -0.6 375,317 + A4249_RS01895 0.21 +0.7 375,317 + A4249_RS01895 0.21 +1.5 375,317 + A4249_RS01895 0.21 +0.9 375,318 - A4249_RS01895 0.21 -0.7 375,318 - A4249_RS01895 0.21 -0.7 375,318 - A4249_RS01895 0.21 -0.5 375,318 - A4249_RS01895 0.21 -0.3 375,318 - A4249_RS01895 0.21 -0.2 375,318 - A4249_RS01895 0.21 -0.6 375,318 - A4249_RS01895 0.21 +0.1 375,318 - A4249_RS01895 0.21 +1.7 375,523 + A4249_RS01895 0.30 +0.4 375,523 + A4249_RS01895 0.30 +1.1 375,523 + A4249_RS01895 0.30 -1.2 375,524 - A4249_RS01895 0.30 -1.1 375,524 - A4249_RS01895 0.30 +0.5 375,524 - A4249_RS01895 0.30 -0.7 375,654 + A4249_RS01895 0.36 -0.9 375,654 + A4249_RS01895 0.36 -0.1 375,710 + A4249_RS01895 0.38 -0.1 375,768 + A4249_RS01895 0.40 +1.3 375,768 + A4249_RS01895 0.40 -2.2 375,769 - A4249_RS01895 0.40 -0.7 375,769 - A4249_RS01895 0.40 -0.1 375,769 - A4249_RS01895 0.40 -0.3
Or see this region's nucleotide sequence