Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01450 and A4249_RS01455 are separated by 72 nucleotides A4249_RS01455 and A4249_RS01460 are separated by 227 nucleotides A4249_RS01460 and A4249_RS01465 are separated by 105 nucleotides A4249_RS01465 and A4249_RS01470 are separated by 13 nucleotides
A4249_RS01450: A4249_RS01450 - SIMPL domain-containing protein, at 268,538 to 269,329
_RS01450
A4249_RS01455: A4249_RS01455 - aspartate 1-decarboxylase, at 269,402 to 269,758
_RS01455
A4249_RS01460: A4249_RS01460 - signal peptide peptidase SppA, at 269,986 to 271,764
_RS01460
A4249_RS01465: A4249_RS01465 - hypothetical protein, at 271,870 to 272,193
_RS01465
A4249_RS01470: A4249_RS01470 - N-acetylmuramoyl-L-alanine amidase, at 272,207 to 272,968
_RS01470
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 269.135 kb on + strand, within A4249_RS01450 at 269.135 kb on + strand, within A4249_RS01450 at 269.135 kb on + strand, within A4249_RS01450 at 269.135 kb on + strand, within A4249_RS01450 at 269.136 kb on - strand, within A4249_RS01450 at 269.136 kb on - strand, within A4249_RS01450 at 269.196 kb on - strand, within A4249_RS01450 at 269.312 kb on + strand at 269.313 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.817 kb on - strand at 269.818 kb on + strand at 269.818 kb on + strand at 269.819 kb on - strand at 269.819 kb on - strand at 269.819 kb on - strand at 269.819 kb on - strand at 269.886 kb on - strand at 269.886 kb on - strand at 269.886 kb on - strand at 269.886 kb on - strand at 269.938 kb on + strand at 269.938 kb on + strand at 270.401 kb on - strand, within A4249_RS01460 at 270.401 kb on - strand, within A4249_RS01460 at 270.508 kb on + strand, within A4249_RS01460 at 270.581 kb on - strand, within A4249_RS01460 at 270.710 kb on - strand, within A4249_RS01460 at 270.829 kb on + strand, within A4249_RS01460 at 270.829 kb on + strand, within A4249_RS01460 at 270.830 kb on - strand, within A4249_RS01460 at 270.830 kb on - strand, within A4249_RS01460 at 270.979 kb on + strand, within A4249_RS01460 at 270.979 kb on + strand, within A4249_RS01460 at 270.979 kb on + strand, within A4249_RS01460 at 271.263 kb on + strand, within A4249_RS01460 at 272.140 kb on + strand, within A4249_RS01465 at 272.140 kb on + strand, within A4249_RS01465 at 272.140 kb on + strand, within A4249_RS01465 at 272.140 kb on + strand, within A4249_RS01465 at 272.140 kb on + strand, within A4249_RS01465 at 272.141 kb on - strand, within A4249_RS01465 at 272.141 kb on - strand, within A4249_RS01465 at 272.141 kb on - strand, within A4249_RS01465 at 272.141 kb on - strand, within A4249_RS01465 at 272.216 kb on + strand at 272.216 kb on + strand at 272.216 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 269,135 + A4249_RS01450 0.75 -0.2 269,135 + A4249_RS01450 0.75 +0.2 269,135 + A4249_RS01450 0.75 +0.4 269,135 + A4249_RS01450 0.75 -0.4 269,136 - A4249_RS01450 0.76 -0.9 269,136 - A4249_RS01450 0.76 -1.0 269,196 - A4249_RS01450 0.83 -1.6 269,312 + -0.5 269,313 - -0.4 269,817 - -0.2 269,817 - +0.1 269,817 - -1.8 269,817 - -1.6 269,817 - -1.0 269,817 - -0.4 269,817 - -1.8 269,818 + +1.1 269,818 + +0.8 269,819 - -0.2 269,819 - -0.3 269,819 - -0.5 269,819 - -0.3 269,886 - -0.5 269,886 - +0.1 269,886 - +0.0 269,886 - -0.6 269,938 + -0.3 269,938 + +0.8 270,401 - A4249_RS01460 0.23 +1.1 270,401 - A4249_RS01460 0.23 +5.1 270,508 + A4249_RS01460 0.29 +3.1 270,581 - A4249_RS01460 0.33 +0.8 270,710 - A4249_RS01460 0.41 +0.5 270,829 + A4249_RS01460 0.47 +1.3 270,829 + A4249_RS01460 0.47 +1.1 270,830 - A4249_RS01460 0.47 +0.1 270,830 - A4249_RS01460 0.47 -0.5 270,979 + A4249_RS01460 0.56 +4.1 270,979 + A4249_RS01460 0.56 +2.1 270,979 + A4249_RS01460 0.56 +3.1 271,263 + A4249_RS01460 0.72 +0.3 272,140 + A4249_RS01465 0.83 -2.2 272,140 + A4249_RS01465 0.83 -0.1 272,140 + A4249_RS01465 0.83 -0.3 272,140 + A4249_RS01465 0.83 +1.3 272,140 + A4249_RS01465 0.83 +1.3 272,141 - A4249_RS01465 0.84 +0.0 272,141 - A4249_RS01465 0.84 +2.5 272,141 - A4249_RS01465 0.84 +1.5 272,141 - A4249_RS01465 0.84 +1.5 272,216 + -0.6 272,216 + -0.1 272,216 + +0.7
Or see this region's nucleotide sequence