Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01255 and A4249_RS01260 are separated by 39 nucleotides A4249_RS01260 and A4249_RS01265 are separated by 65 nucleotides A4249_RS01265 and A4249_RS01270 overlap by 1 nucleotides A4249_RS01270 and A4249_RS01275 overlap by 25 nucleotides A4249_RS01275 and A4249_RS01280 are separated by 17 nucleotides
A4249_RS01255: A4249_RS01255 - phage tail tube protein, at 240,650 to 241,639
_RS01255
A4249_RS01260: A4249_RS01260 - hypothetical protein, at 241,679 to 241,915
_RS01260
A4249_RS01265: A4249_RS01265 - hypothetical protein, at 241,981 to 242,490
_RS01265
A4249_RS01270: A4249_RS01270 - DUF6441 family protein, at 242,490 to 243,359
_RS01270
A4249_RS01275: A4249_RS01275 - hypothetical protein, at 243,335 to 243,673
_RS01275
A4249_RS01280: A4249_RS01280 - major capsid protein, at 243,691 to 244,770
_RS01280
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.524 kb on + strand, within A4249_RS01255 at 241.524 kb on + strand, within A4249_RS01255 at 241.524 kb on + strand, within A4249_RS01255 at 241.524 kb on + strand, within A4249_RS01255 at 241.524 kb on + strand, within A4249_RS01255 at 241.525 kb on - strand, within A4249_RS01255 at 241.596 kb on + strand at 241.596 kb on + strand at 241.596 kb on + strand at 241.596 kb on + strand at 241.596 kb on + strand at 242.006 kb on + strand at 242.006 kb on + strand at 242.007 kb on - strand at 242.007 kb on - strand at 242.007 kb on - strand at 242.007 kb on - strand at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.099 kb on + strand, within A4249_RS01265 at 242.100 kb on - strand, within A4249_RS01265 at 242.240 kb on + strand, within A4249_RS01265 at 242.241 kb on - strand, within A4249_RS01265 at 242.339 kb on - strand, within A4249_RS01265 at 242.782 kb on + strand, within A4249_RS01270 at 242.782 kb on + strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 242.969 kb on - strand, within A4249_RS01270 at 243.071 kb on + strand, within A4249_RS01270 at 243.071 kb on + strand, within A4249_RS01270 at 243.072 kb on - strand, within A4249_RS01270 at 243.072 kb on - strand, within A4249_RS01270 at 243.072 kb on - strand, within A4249_RS01270 at 243.161 kb on + strand, within A4249_RS01270 at 243.230 kb on + strand, within A4249_RS01270 at 243.230 kb on + strand, within A4249_RS01270 at 243.230 kb on + strand, within A4249_RS01270 at 243.231 kb on - strand, within A4249_RS01270 at 243.231 kb on - strand, within A4249_RS01270 at 243.231 kb on - strand, within A4249_RS01270 at 243.231 kb on - strand, within A4249_RS01270 at 243.253 kb on + strand, within A4249_RS01270 at 243.253 kb on + strand, within A4249_RS01270 at 243.253 kb on + strand, within A4249_RS01270 at 243.254 kb on - strand, within A4249_RS01270 at 243.422 kb on + strand, within A4249_RS01275 at 243.423 kb on - strand, within A4249_RS01275 at 243.423 kb on - strand, within A4249_RS01275 at 243.423 kb on - strand, within A4249_RS01275 at 243.423 kb on - strand, within A4249_RS01275 at 243.423 kb on - strand, within A4249_RS01275 at 243.647 kb on + strand at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.887 kb on + strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.888 kb on - strand, within A4249_RS01280 at 243.920 kb on + strand, within A4249_RS01280 at 243.989 kb on + strand, within A4249_RS01280 at 243.989 kb on + strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 243.990 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.087 kb on - strand, within A4249_RS01280 at 244.094 kb on + strand, within A4249_RS01280 at 244.094 kb on + strand, within A4249_RS01280 at 244.095 kb on - strand, within A4249_RS01280 at 244.095 kb on - strand, within A4249_RS01280 at 244.236 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.259 kb on + strand, within A4249_RS01280 at 244.260 kb on - strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.301 kb on + strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280 at 244.302 kb on - strand, within A4249_RS01280
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 241,524 + A4249_RS01255 0.88 -0.1 241,524 + A4249_RS01255 0.88 +0.7 241,524 + A4249_RS01255 0.88 -1.0 241,524 + A4249_RS01255 0.88 +0.5 241,524 + A4249_RS01255 0.88 -0.6 241,525 - A4249_RS01255 0.88 -2.1 241,596 + +0.2 241,596 + -0.0 241,596 + +0.2 241,596 + -0.3 241,596 + +0.0 242,006 + -0.7 242,006 + +1.0 242,007 - +1.5 242,007 - -0.5 242,007 - +0.9 242,007 - -1.3 242,099 + A4249_RS01265 0.23 -0.4 242,099 + A4249_RS01265 0.23 +0.8 242,099 + A4249_RS01265 0.23 -0.4 242,099 + A4249_RS01265 0.23 -0.2 242,099 + A4249_RS01265 0.23 -1.0 242,099 + A4249_RS01265 0.23 -1.8 242,099 + A4249_RS01265 0.23 -0.4 242,099 + A4249_RS01265 0.23 -0.4 242,100 - A4249_RS01265 0.23 +0.3 242,240 + A4249_RS01265 0.51 +0.1 242,241 - A4249_RS01265 0.51 +0.1 242,339 - A4249_RS01265 0.70 +0.8 242,782 + A4249_RS01270 0.34 -0.8 242,782 + A4249_RS01270 0.34 +0.4 242,969 - A4249_RS01270 0.55 +1.0 242,969 - A4249_RS01270 0.55 +0.4 242,969 - A4249_RS01270 0.55 -0.5 242,969 - A4249_RS01270 0.55 +0.9 242,969 - A4249_RS01270 0.55 +0.1 242,969 - A4249_RS01270 0.55 -0.4 242,969 - A4249_RS01270 0.55 +0.5 242,969 - A4249_RS01270 0.55 +1.4 243,071 + A4249_RS01270 0.67 -0.1 243,071 + A4249_RS01270 0.67 -0.6 243,072 - A4249_RS01270 0.67 +0.5 243,072 - A4249_RS01270 0.67 +0.5 243,072 - A4249_RS01270 0.67 +0.5 243,161 + A4249_RS01270 0.77 +0.0 243,230 + A4249_RS01270 0.85 +0.3 243,230 + A4249_RS01270 0.85 -1.8 243,230 + A4249_RS01270 0.85 +0.4 243,231 - A4249_RS01270 0.85 +1.7 243,231 - A4249_RS01270 0.85 +1.1 243,231 - A4249_RS01270 0.85 -0.5 243,231 - A4249_RS01270 0.85 +0.4 243,253 + A4249_RS01270 0.88 +1.5 243,253 + A4249_RS01270 0.88 +0.6 243,253 + A4249_RS01270 0.88 -0.1 243,254 - A4249_RS01270 0.88 +0.5 243,422 + A4249_RS01275 0.26 -0.4 243,423 - A4249_RS01275 0.26 -0.5 243,423 - A4249_RS01275 0.26 -1.8 243,423 - A4249_RS01275 0.26 -2.3 243,423 - A4249_RS01275 0.26 -0.5 243,423 - A4249_RS01275 0.26 -1.1 243,647 + -0.7 243,887 + A4249_RS01280 0.18 +0.7 243,887 + A4249_RS01280 0.18 +0.8 243,887 + A4249_RS01280 0.18 -0.6 243,887 + A4249_RS01280 0.18 -0.8 243,887 + A4249_RS01280 0.18 +0.2 243,887 + A4249_RS01280 0.18 +0.5 243,888 - A4249_RS01280 0.18 -1.1 243,888 - A4249_RS01280 0.18 -0.1 243,888 - A4249_RS01280 0.18 -1.4 243,920 + A4249_RS01280 0.21 -0.6 243,989 + A4249_RS01280 0.28 -0.1 243,989 + A4249_RS01280 0.28 +0.4 243,990 - A4249_RS01280 0.28 -1.0 243,990 - A4249_RS01280 0.28 +0.2 243,990 - A4249_RS01280 0.28 -1.7 243,990 - A4249_RS01280 0.28 +1.5 243,990 - A4249_RS01280 0.28 -0.3 244,087 - A4249_RS01280 0.37 +0.9 244,087 - A4249_RS01280 0.37 -0.1 244,087 - A4249_RS01280 0.37 -0.6 244,087 - A4249_RS01280 0.37 -0.8 244,087 - A4249_RS01280 0.37 -0.3 244,087 - A4249_RS01280 0.37 -0.3 244,094 + A4249_RS01280 0.37 +0.5 244,094 + A4249_RS01280 0.37 -0.3 244,095 - A4249_RS01280 0.37 -0.7 244,095 - A4249_RS01280 0.37 -0.1 244,236 + A4249_RS01280 0.50 +0.7 244,259 + A4249_RS01280 0.53 -1.2 244,259 + A4249_RS01280 0.53 -0.3 244,259 + A4249_RS01280 0.53 -1.3 244,260 - A4249_RS01280 0.53 -0.3 244,301 + A4249_RS01280 0.56 +0.2 244,301 + A4249_RS01280 0.56 -0.1 244,301 + A4249_RS01280 0.56 -1.1 244,301 + A4249_RS01280 0.56 -1.1 244,301 + A4249_RS01280 0.56 +0.6 244,302 - A4249_RS01280 0.57 +2.0 244,302 - A4249_RS01280 0.57 -0.5 244,302 - A4249_RS01280 0.57 -0.4 244,302 - A4249_RS01280 0.57 +0.8 244,302 - A4249_RS01280 0.57 -2.2 244,302 - A4249_RS01280 0.57 +0.5 244,302 - A4249_RS01280 0.57 -0.9 244,302 - A4249_RS01280 0.57 -0.3 244,302 - A4249_RS01280 0.57 -0.1 244,302 - A4249_RS01280 0.57 -0.1
Or see this region's nucleotide sequence