Experiment: Cytidine 0.41115 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01205 and A4249_RS01210 are separated by 113 nucleotides A4249_RS01210 and A4249_RS01215 overlap by 4 nucleotides A4249_RS01215 and A4249_RS01220 are separated by 56 nucleotides A4249_RS01220 and A4249_RS17020 are separated by 26 nucleotides A4249_RS17020 and A4249_RS01225 are separated by 26 nucleotides
A4249_RS01205: A4249_RS01205 - hypothetical protein, at 228,345 to 228,812
_RS01205
A4249_RS01210: A4249_RS01210 - hypothetical protein, at 228,926 to 229,441
_RS01210
A4249_RS01215: A4249_RS01215 - hypothetical protein, at 229,438 to 229,779
_RS01215
A4249_RS01220: A4249_RS01220 - hypothetical protein, at 229,836 to 230,165
_RS01220
A4249_RS17020: A4249_RS17020 - hypothetical protein, at 230,192 to 230,326
_RS17020
A4249_RS01225: A4249_RS01225 - hypothetical protein, at 230,353 to 235,407
_RS01225
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 228.054 kb on + strand at 228.054 kb on + strand at 228.054 kb on + strand at 228.054 kb on + strand at 228.055 kb on - strand at 228.055 kb on - strand at 228.055 kb on - strand at 228.055 kb on - strand at 228.055 kb on - strand at 228.062 kb on + strand at 228.079 kb on + strand at 228.080 kb on - strand at 228.080 kb on - strand at 228.152 kb on - strand at 228.254 kb on + strand at 228.255 kb on - strand at 228.255 kb on - strand at 228.255 kb on - strand at 228.255 kb on - strand at 228.280 kb on + strand at 228.280 kb on + strand at 228.294 kb on + strand at 228.295 kb on - strand at 228.295 kb on - strand at 228.360 kb on + strand at 228.360 kb on + strand at 228.360 kb on + strand at 228.360 kb on + strand at 228.360 kb on + strand at 228.361 kb on - strand at 228.361 kb on - strand at 228.361 kb on - strand at 228.361 kb on - strand at 228.365 kb on + strand at 228.366 kb on - strand at 228.366 kb on - strand at 228.387 kb on + strand at 228.387 kb on + strand at 228.387 kb on + strand at 228.388 kb on - strand at 228.423 kb on + strand, within A4249_RS01205 at 228.424 kb on - strand, within A4249_RS01205 at 228.436 kb on + strand, within A4249_RS01205 at 228.436 kb on + strand, within A4249_RS01205 at 228.436 kb on + strand, within A4249_RS01205 at 228.436 kb on + strand, within A4249_RS01205 at 228.437 kb on - strand, within A4249_RS01205 at 228.437 kb on - strand, within A4249_RS01205 at 228.438 kb on + strand, within A4249_RS01205 at 228.438 kb on + strand, within A4249_RS01205 at 228.439 kb on - strand, within A4249_RS01205 at 228.439 kb on - strand, within A4249_RS01205 at 228.523 kb on - strand, within A4249_RS01205 at 228.530 kb on + strand, within A4249_RS01205 at 228.530 kb on + strand, within A4249_RS01205 at 228.530 kb on + strand, within A4249_RS01205 at 228.530 kb on + strand, within A4249_RS01205 at 228.531 kb on - strand, within A4249_RS01205 at 228.531 kb on - strand, within A4249_RS01205 at 228.531 kb on - strand, within A4249_RS01205 at 228.534 kb on + strand, within A4249_RS01205 at 228.534 kb on + strand, within A4249_RS01205 at 228.534 kb on + strand, within A4249_RS01205 at 228.534 kb on + strand, within A4249_RS01205 at 228.535 kb on - strand, within A4249_RS01205 at 228.535 kb on - strand, within A4249_RS01205 at 228.560 kb on + strand, within A4249_RS01205 at 228.560 kb on + strand, within A4249_RS01205 at 228.560 kb on + strand, within A4249_RS01205 at 228.561 kb on - strand, within A4249_RS01205 at 228.561 kb on - strand, within A4249_RS01205 at 228.561 kb on - strand, within A4249_RS01205 at 228.603 kb on + strand, within A4249_RS01205 at 228.603 kb on + strand, within A4249_RS01205 at 228.611 kb on + strand, within A4249_RS01205 at 228.612 kb on - strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.686 kb on + strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.687 kb on - strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.694 kb on + strand, within A4249_RS01205 at 228.695 kb on - strand, within A4249_RS01205 at 228.695 kb on - strand, within A4249_RS01205 at 228.695 kb on - strand, within A4249_RS01205 at 228.695 kb on - strand, within A4249_RS01205 at 228.695 kb on - strand, within A4249_RS01205 at 228.712 kb on + strand, within A4249_RS01205 at 228.713 kb on - strand, within A4249_RS01205 at 228.713 kb on - strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.753 kb on + strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.754 kb on - strand, within A4249_RS01205 at 228.800 kb on + strand at 228.800 kb on + strand at 228.801 kb on - strand at 228.801 kb on - strand at 228.801 kb on - strand at 228.801 kb on - strand at 228.801 kb on - strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.815 kb on + strand at 228.816 kb on - strand at 228.816 kb on - strand at 228.816 kb on - strand at 228.816 kb on - strand at 228.816 kb on - strand at 228.845 kb on - strand at 228.845 kb on - strand at 228.845 kb on - strand at 228.871 kb on + strand at 228.871 kb on + strand at 228.871 kb on + strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.872 kb on - strand at 228.977 kb on + strand at 228.977 kb on + strand at 228.977 kb on + strand at 228.977 kb on + strand at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.228 kb on + strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.229 kb on - strand, within A4249_RS01210 at 229.301 kb on + strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.302 kb on - strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.347 kb on + strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.348 kb on - strand, within A4249_RS01210 at 229.362 kb on - strand, within A4249_RS01210 at 229.486 kb on - strand, within A4249_RS01215 at 229.486 kb on - strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.697 kb on + strand, within A4249_RS01215 at 229.827 kb on + strand at 229.827 kb on + strand at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.095 kb on + strand, within A4249_RS01220 at 230.108 kb on + strand, within A4249_RS01220 at 230.330 kb on + strand at 230.432 kb on + strand at 230.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine 0.41115 mM (C) remove 228,054 + +1.4 228,054 + +0.2 228,054 + -0.5 228,054 + -0.8 228,055 - -0.4 228,055 - +2.0 228,055 - -0.0 228,055 - -2.1 228,055 - -0.3 228,062 + +0.5 228,079 + -0.1 228,080 - -1.1 228,080 - -0.1 228,152 - +0.5 228,254 + +0.6 228,255 - -0.1 228,255 - -0.8 228,255 - -1.2 228,255 - -0.4 228,280 + +0.0 228,280 + -0.9 228,294 + -1.9 228,295 - -0.1 228,295 - +0.5 228,360 + -0.8 228,360 + -0.1 228,360 + -0.0 228,360 + -0.5 228,360 + -0.9 228,361 - +0.1 228,361 - +0.6 228,361 - -0.7 228,361 - +0.0 228,365 + -0.9 228,366 - -0.6 228,366 - +1.1 228,387 + +0.8 228,387 + +0.5 228,387 + -0.2 228,388 - +0.5 228,423 + A4249_RS01205 0.17 -0.1 228,424 - A4249_RS01205 0.17 -1.1 228,436 + A4249_RS01205 0.19 -0.0 228,436 + A4249_RS01205 0.19 -0.5 228,436 + A4249_RS01205 0.19 -0.7 228,436 + A4249_RS01205 0.19 -0.3 228,437 - A4249_RS01205 0.20 +0.8 228,437 - A4249_RS01205 0.20 -0.8 228,438 + A4249_RS01205 0.20 +0.9 228,438 + A4249_RS01205 0.20 +0.0 228,439 - A4249_RS01205 0.20 -0.8 228,439 - A4249_RS01205 0.20 -0.9 228,523 - A4249_RS01205 0.38 +0.4 228,530 + A4249_RS01205 0.40 -1.0 228,530 + A4249_RS01205 0.40 -0.3 228,530 + A4249_RS01205 0.40 +0.5 228,530 + A4249_RS01205 0.40 +0.1 228,531 - A4249_RS01205 0.40 +0.7 228,531 - A4249_RS01205 0.40 -0.5 228,531 - A4249_RS01205 0.40 -0.4 228,534 + A4249_RS01205 0.40 +0.8 228,534 + A4249_RS01205 0.40 +1.0 228,534 + A4249_RS01205 0.40 -0.2 228,534 + A4249_RS01205 0.40 -0.7 228,535 - A4249_RS01205 0.41 -0.9 228,535 - A4249_RS01205 0.41 -0.2 228,560 + A4249_RS01205 0.46 +2.3 228,560 + A4249_RS01205 0.46 -1.0 228,560 + A4249_RS01205 0.46 +1.3 228,561 - A4249_RS01205 0.46 +0.4 228,561 - A4249_RS01205 0.46 -0.6 228,561 - A4249_RS01205 0.46 -0.5 228,603 + A4249_RS01205 0.55 -0.4 228,603 + A4249_RS01205 0.55 +0.3 228,611 + A4249_RS01205 0.57 +0.1 228,612 - A4249_RS01205 0.57 -0.7 228,686 + A4249_RS01205 0.73 +0.3 228,686 + A4249_RS01205 0.73 -0.4 228,686 + A4249_RS01205 0.73 +1.4 228,686 + A4249_RS01205 0.73 -0.3 228,686 + A4249_RS01205 0.73 +0.5 228,686 + A4249_RS01205 0.73 +0.2 228,687 - A4249_RS01205 0.73 +1.3 228,687 - A4249_RS01205 0.73 +1.1 228,687 - A4249_RS01205 0.73 -1.2 228,687 - A4249_RS01205 0.73 -0.7 228,687 - A4249_RS01205 0.73 +1.1 228,687 - A4249_RS01205 0.73 -0.5 228,687 - A4249_RS01205 0.73 +0.2 228,694 + A4249_RS01205 0.75 +0.2 228,694 + A4249_RS01205 0.75 -0.5 228,694 + A4249_RS01205 0.75 -1.1 228,694 + A4249_RS01205 0.75 +0.0 228,694 + A4249_RS01205 0.75 +0.7 228,694 + A4249_RS01205 0.75 -0.8 228,694 + A4249_RS01205 0.75 -0.8 228,694 + A4249_RS01205 0.75 +1.0 228,695 - A4249_RS01205 0.75 +0.3 228,695 - A4249_RS01205 0.75 -0.3 228,695 - A4249_RS01205 0.75 +0.2 228,695 - A4249_RS01205 0.75 +0.0 228,695 - A4249_RS01205 0.75 +0.8 228,712 + A4249_RS01205 0.78 -0.4 228,713 - A4249_RS01205 0.79 +0.8 228,713 - A4249_RS01205 0.79 +0.9 228,753 + A4249_RS01205 0.87 +1.7 228,753 + A4249_RS01205 0.87 +0.0 228,753 + A4249_RS01205 0.87 +0.1 228,753 + A4249_RS01205 0.87 -0.8 228,753 + A4249_RS01205 0.87 +0.1 228,753 + A4249_RS01205 0.87 -0.6 228,753 + A4249_RS01205 0.87 -0.0 228,753 + A4249_RS01205 0.87 -0.6 228,753 + A4249_RS01205 0.87 -0.5 228,753 + A4249_RS01205 0.87 -0.7 228,753 + A4249_RS01205 0.87 -1.5 228,753 + A4249_RS01205 0.87 -1.2 228,753 + A4249_RS01205 0.87 +0.2 228,754 - A4249_RS01205 0.87 -0.5 228,754 - A4249_RS01205 0.87 +0.8 228,754 - A4249_RS01205 0.87 +1.1 228,754 - A4249_RS01205 0.87 -0.6 228,754 - A4249_RS01205 0.87 +0.1 228,754 - A4249_RS01205 0.87 -0.1 228,754 - A4249_RS01205 0.87 -0.2 228,754 - A4249_RS01205 0.87 -0.1 228,754 - A4249_RS01205 0.87 -1.5 228,754 - A4249_RS01205 0.87 -0.2 228,754 - A4249_RS01205 0.87 +0.5 228,754 - A4249_RS01205 0.87 -0.7 228,800 + -0.4 228,800 + -0.3 228,801 - -0.2 228,801 - +0.1 228,801 - -1.8 228,801 - -0.2 228,801 - +1.5 228,815 + +0.5 228,815 + -2.4 228,815 + +0.2 228,815 + -0.9 228,815 + +0.1 228,815 + +0.3 228,815 + -1.2 228,815 + -0.3 228,815 + +0.0 228,816 - +0.4 228,816 - +0.4 228,816 - +0.1 228,816 - +1.5 228,816 - -0.2 228,845 - -1.7 228,845 - -0.2 228,845 - -0.9 228,871 + -2.0 228,871 + -0.5 228,871 + -0.7 228,872 - +0.6 228,872 - +0.2 228,872 - -0.7 228,872 - +0.4 228,872 - +0.6 228,872 - +0.9 228,977 + -0.6 228,977 + +0.4 228,977 + +1.3 228,977 + -0.6 229,228 + A4249_RS01210 0.59 +0.5 229,228 + A4249_RS01210 0.59 -0.3 229,228 + A4249_RS01210 0.59 -1.8 229,228 + A4249_RS01210 0.59 +0.7 229,228 + A4249_RS01210 0.59 -0.0 229,228 + A4249_RS01210 0.59 -0.5 229,228 + A4249_RS01210 0.59 +3.1 229,228 + A4249_RS01210 0.59 +0.4 229,228 + A4249_RS01210 0.59 -0.3 229,228 + A4249_RS01210 0.59 -0.8 229,228 + A4249_RS01210 0.59 +0.6 229,228 + A4249_RS01210 0.59 -0.6 229,229 - A4249_RS01210 0.59 -0.8 229,229 - A4249_RS01210 0.59 -0.2 229,229 - A4249_RS01210 0.59 -0.5 229,229 - A4249_RS01210 0.59 +0.8 229,229 - A4249_RS01210 0.59 +1.2 229,229 - A4249_RS01210 0.59 +0.1 229,229 - A4249_RS01210 0.59 +1.1 229,229 - A4249_RS01210 0.59 +1.8 229,229 - A4249_RS01210 0.59 +1.1 229,301 + A4249_RS01210 0.73 +1.2 229,302 - A4249_RS01210 0.73 -0.3 229,302 - A4249_RS01210 0.73 -0.8 229,302 - A4249_RS01210 0.73 +0.2 229,302 - A4249_RS01210 0.73 -1.1 229,302 - A4249_RS01210 0.73 +0.2 229,302 - A4249_RS01210 0.73 +0.8 229,347 + A4249_RS01210 0.82 -0.1 229,347 + A4249_RS01210 0.82 +0.5 229,347 + A4249_RS01210 0.82 -0.1 229,348 - A4249_RS01210 0.82 +0.3 229,348 - A4249_RS01210 0.82 +1.3 229,348 - A4249_RS01210 0.82 -0.2 229,348 - A4249_RS01210 0.82 +1.2 229,348 - A4249_RS01210 0.82 -0.9 229,362 - A4249_RS01210 0.84 -2.1 229,486 - A4249_RS01215 0.14 -0.5 229,486 - A4249_RS01215 0.14 +0.1 229,697 + A4249_RS01215 0.76 +0.7 229,697 + A4249_RS01215 0.76 -0.4 229,697 + A4249_RS01215 0.76 -1.4 229,827 + +0.5 229,827 + -0.2 230,095 + A4249_RS01220 0.78 +0.1 230,095 + A4249_RS01220 0.78 -0.5 230,095 + A4249_RS01220 0.78 -0.4 230,095 + A4249_RS01220 0.78 +0.2 230,108 + A4249_RS01220 0.82 +0.1 230,330 + -0.5 230,432 + +0.6 230,432 + -0.3
Or see this region's nucleotide sequence